Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11271 | Sorghum | nucleus | 88.15 | 93.16 |
| Zm00001d026113_P006 | Maize | nucleus | 82.94 | 87.65 |
| CDY04118 | Canola | nucleus | 16.11 | 85.71 |
| CDY09390 | Canola | nucleus | 15.96 | 84.87 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 78.67 | 81.37 |
| Os04t0566400-02 | Rice | nucleus | 75.2 | 77.65 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 78.52 | 75.08 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 77.88 | 74.36 |
| Os02t0672100-01 | Rice | nucleus | 66.03 | 67.97 |
| Zm00001d017560_P001 | Maize | nucleus | 61.14 | 66.49 |
| CDY53540 | Canola | nucleus | 20.06 | 65.46 |
| CDY04117 | Canola | nucleus | 21.8 | 64.49 |
| KRG89168 | Soybean | nucleus, plastid | 30.81 | 56.03 |
| Zm00001d039254_P001 | Maize | nucleus | 27.33 | 48.87 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 39.02 | 43.18 |
| GSMUA_Achr10P... | Banana | nucleus | 32.54 | 43.01 |
| CDY03081 | Canola | nucleus | 35.07 | 42.37 |
| Zm00001d021403_P001 | Maize | nucleus | 32.39 | 42.36 |
| CDY17615 | Canola | nucleus | 35.23 | 42.31 |
| KRH49489 | Soybean | nucleus, plastid | 35.39 | 42.03 |
| Zm00001d031992_P001 | Maize | nucleus | 40.13 | 41.98 |
| KRG90705 | Soybean | nucleus | 37.6 | 41.98 |
| CDY59418 | Canola | nucleus | 27.17 | 41.65 |
| KRH49485 | Soybean | nucleus | 35.7 | 41.62 |
| CDY45271 | Canola | nucleus | 27.17 | 41.35 |
| KRH36039 | Soybean | nucleus | 37.28 | 41.33 |
| Zm00001d008842_P001 | Maize | nucleus | 30.33 | 41.11 |
| KRG89167 | Soybean | nucleus, plastid | 35.55 | 40.98 |
| Zm00001d011223_P002 | Maize | nucleus | 30.17 | 40.81 |
| Zm00001d039467_P001 | Maize | nucleus | 31.91 | 40.64 |
| PGSC0003DMT400075837 | Potato | nucleus | 33.18 | 40.54 |
| Bra024834.1-P | Field mustard | nucleus, plastid | 35.23 | 40.4 |
| CDY17440 | Canola | nucleus | 30.33 | 40.17 |
| Zm00001d009030_P002 | Maize | nucleus | 28.28 | 40.04 |
| Solyc04g008500.2.1 | Tomato | nucleus | 32.54 | 39.85 |
| CDY15814 | Canola | nucleus | 29.7 | 39.75 |
| Zm00001d044261_P001 | Maize | nucleus | 30.02 | 39.58 |
| CDY45270 | Canola | nucleus | 28.12 | 39.56 |
| Bra026204.1-P | Field mustard | nucleus, plastid | 28.12 | 39.56 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 32.23 | 39.53 |
| CDY15811 | Canola | nucleus | 35.39 | 39.44 |
| CDY09391 | Canola | nucleus | 35.23 | 39.33 |
| Bra026819.1-P | Field mustard | nucleus | 28.91 | 39.19 |
| CDX81653 | Canola | nucleus | 28.91 | 39.19 |
| KRH34792 | Soybean | nucleus | 34.28 | 39.1 |
| Bra026616.1-P | Field mustard | nucleus | 31.44 | 38.94 |
| KRG91985 | Soybean | nucleus | 34.44 | 38.93 |
| CDY17614 | Canola | nucleus, plastid | 30.96 | 38.21 |
| Bra024833.1-P | Field mustard | plastid | 30.81 | 38.01 |
| Bra026617.1-P | Field mustard | nucleus | 35.23 | 37.8 |
| Bra040974.1-P | Field mustard | nucleus, plastid | 34.91 | 37.78 |
| AT2G02070.2 | Thale cress | nucleus | 35.86 | 37.71 |
| AT1G14580.3 | Thale cress | nucleus | 28.59 | 37.63 |
| GSMUA_Achr11P... | Banana | nucleus | 33.33 | 37.28 |
| CDY03080 | Canola | nucleus, plastid | 30.33 | 37.21 |
| Zm00001d032922_P001 | Maize | nucleus | 25.59 | 37.16 |
| Bra026203.1-P | Field mustard | nucleus, plastid | 27.01 | 36.85 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 37.76 | 36.16 |
| Zm00001d028139_P001 | Maize | nucleus | 30.33 | 35.62 |
| Zm00001d016632_P001 | Maize | nucleus | 27.8 | 34.65 |
| Zm00001d006319_P001 | Maize | nucleus | 30.17 | 34.17 |
| Zm00001d042202_P001 | Maize | nucleus | 27.8 | 33.52 |
| Bra023223.1-P | Field mustard | plastid | 25.28 | 33.33 |
| CDY12268 | Canola | nucleus | 22.27 | 31.61 |
| CDY68983 | Canola | nucleus | 18.64 | 30.18 |
| Zm00001d005871_P002 | Maize | nucleus | 18.96 | 27.21 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 19.12 | 26.77 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 18.8 | 26.56 |
| Zm00001d020683_P001 | Maize | nucleus | 19.27 | 24.55 |
| Zm00001d031759_P001 | Maize | nucleus | 20.06 | 24.52 |
| Zm00001d006682_P001 | Maize | nucleus | 28.59 | 24.39 |
| Zm00001d021932_P001 | Maize | nucleus | 28.59 | 22.21 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:542199 | UniProt:A0A1D6E319 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR013087 | ProteinID:ONM14945.1 | ProteinID:ONM14954.1 | ProteinID:ONM14958.1 |
| ProteinID:ONM14967.1 | PFAM:PF12171 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF63 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000843B0FB | EnsemblPlantsGene:Zm00001d002654 | EnsemblPlants:Zm00001d002654_P003 | EnsemblPlants:Zm00001d002654_T003 |
| InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
naked endosperm1 naked endosperm1
Coordinates
chr2:-:18312495..18320006
Molecular Weight (calculated)
66254.9 Da
IEP (calculated)
7.786
GRAVY (calculated)
-0.368
Length
633 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNSSAAFF GVRDGDQQDQ IKPLISPQQQ LAAALPGVAG GVPAASGQGA PPAQPPPKKK RTMPDPDAEV IALSPKTLMA TNRFVCEVCN KGFQREQNLQ
101: LHRRGHNLPW KLKQKNPLQA QRRRVYLCPE PTCVHHDPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KICGTREYRC DCGTLFSSSD
201: ANVFAAFFSS FLLVGTWQCY PAHITFFPIL IDMGFWDLEL ALWRDSFITH RAFCDALAQE SARLPPTSLS SLTSHLYGAT STGNMALSLS QVGSHLTSTL
301: QDGHHHHPSA ELLRLGATAG GGSSIAARLD HLLSPNGASA FRPPQGPPSS ASFFLNAGAS VGPDFGDDVG NGPHSFLQGN KPFHGLMQLP DLQGNGAGGP
401: GGSGPSLFNL SFFANNGNSS GSSHEHASQG LMNNNDHFNG GAGGGGGGSE ASEAGIFGGN FVGGGDQVPP PGLYSDQASM LPQMSATALL QKAAQMGATS
501: SANGGAASMF RGFVGSSPHV RPATPHMEQS DANLNDLMNS LAGGGVGAGG MFGSSNGAGG PGMFDPRQLC DMEHEVKFGH GGGDMTRDFL GVGGGGIVRG
601: ISTPRGDHQS SSDMSSLEAE MKSASSFNGG RMP
101: LHRRGHNLPW KLKQKNPLQA QRRRVYLCPE PTCVHHDPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KICGTREYRC DCGTLFSSSD
201: ANVFAAFFSS FLLVGTWQCY PAHITFFPIL IDMGFWDLEL ALWRDSFITH RAFCDALAQE SARLPPTSLS SLTSHLYGAT STGNMALSLS QVGSHLTSTL
301: QDGHHHHPSA ELLRLGATAG GGSSIAARLD HLLSPNGASA FRPPQGPPSS ASFFLNAGAS VGPDFGDDVG NGPHSFLQGN KPFHGLMQLP DLQGNGAGGP
401: GGSGPSLFNL SFFANNGNSS GSSHEHASQG LMNNNDHFNG GAGGGGGGSE ASEAGIFGGN FVGGGDQVPP PGLYSDQASM LPQMSATALL QKAAQMGATS
501: SANGGAASMF RGFVGSSPHV RPATPHMEQS DANLNDLMNS LAGGGVGAGG MFGSSNGAGG PGMFDPRQLC DMEHEVKFGH GGGDMTRDFL GVGGGGIVRG
601: ISTPRGDHQS SSDMSSLEAE MKSASSFNGG RMP
001: MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP QKKKRNQPRT PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF
Arabidopsis Description
IDD5Protein indeterminate-domain 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.