Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04118 | Canola | nucleus | 16.75 | 86.55 |
| CDY09390 | Canola | nucleus | 16.59 | 85.71 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 71.38 | 71.73 |
| EES11271 | Sorghum | nucleus | 69.11 | 70.95 |
| Zm00001d026113_P006 | Maize | nucleus | 67.15 | 68.95 |
| Os04t0566400-02 | Rice | nucleus | 67.15 | 67.37 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 71.38 | 66.31 |
| Zm00001d002654_P003 | Maize | nucleus | 67.97 | 66.03 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 71.06 | 65.91 |
| CDY53540 | Canola | nucleus | 20.49 | 64.95 |
| CDY04117 | Canola | nucleus | 21.79 | 62.62 |
| KRG89168 | Soybean | nucleus, plastid | 31.87 | 56.32 |
| Os08t0554400-02 | Rice | nucleus | 41.63 | 46.72 |
| Os01t0242200-01 | Rice | nucleus | 31.06 | 46.02 |
| Os09t0555700-02 | Rice | nucleus | 39.35 | 45.23 |
| KRH49489 | Soybean | nucleus, plastid | 37.89 | 43.71 |
| GSMUA_Achr10P... | Banana | nucleus | 33.66 | 43.22 |
| CDY59418 | Canola | nucleus | 28.78 | 42.86 |
| KRG90705 | Soybean | nucleus | 38.86 | 42.15 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 38.86 | 41.78 |
| KRH36039 | Soybean | nucleus | 38.37 | 41.33 |
| KRH49485 | Soybean | nucleus | 36.26 | 41.07 |
| KRG89167 | Soybean | nucleus, plastid | 36.42 | 40.8 |
| CDY17440 | Canola | nucleus | 31.71 | 40.8 |
| CDY45271 | Canola | nucleus | 27.15 | 40.14 |
| CDY03081 | Canola | nucleus | 34.15 | 40.08 |
| CDY17615 | Canola | nucleus | 34.31 | 40.04 |
| Bra026819.1-P | Field mustard | nucleus | 30.24 | 39.83 |
| CDX81653 | Canola | nucleus | 30.08 | 39.61 |
| PGSC0003DMT400075837 | Potato | nucleus | 33.33 | 39.58 |
| KRH34792 | Soybean | nucleus | 35.61 | 39.46 |
| Solyc04g008500.2.1 | Tomato | nucleus | 32.85 | 39.07 |
| CDY15814 | Canola | nucleus | 29.92 | 38.9 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 32.52 | 38.76 |
| KRG91985 | Soybean | nucleus | 35.28 | 38.75 |
| Bra026204.1-P | Field mustard | nucleus, plastid | 28.13 | 38.44 |
| CDY45270 | Canola | nucleus | 28.13 | 38.44 |
| Os01t0195000-01 | Rice | nucleus | 30.41 | 38.4 |
| Os01t0572300-01 | Rice | nucleus | 33.5 | 38.36 |
| Bra026616.1-P | Field mustard | nucleus | 31.87 | 38.36 |
| Os03t0197800-00 | Rice | nucleus | 34.31 | 38.22 |
| Bra024834.1-P | Field mustard | nucleus, plastid | 34.31 | 38.22 |
| CDY09391 | Canola | nucleus | 35.12 | 38.1 |
| CDY15811 | Canola | nucleus | 35.12 | 38.03 |
| CDY17614 | Canola | nucleus, plastid | 31.54 | 37.82 |
| GSMUA_Achr11P... | Banana | nucleus | 34.8 | 37.81 |
| Bra024833.1-P | Field mustard | plastid | 31.38 | 37.62 |
| Os01t0935000-01 | Rice | nucleus | 28.78 | 37.18 |
| CDY03080 | Canola | nucleus, plastid | 30.89 | 36.82 |
| AT1G14580.3 | Thale cress | nucleus | 28.78 | 36.8 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 39.51 | 36.76 |
| Bra026617.1-P | Field mustard | nucleus | 35.12 | 36.61 |
| Bra040974.1-P | Field mustard | nucleus, plastid | 34.47 | 36.24 |
| Os10t0419200-01 | Rice | nucleus | 27.97 | 36.21 |
| Bra026203.1-P | Field mustard | nucleus, plastid | 27.15 | 35.99 |
| Os02t0518500-00 | Rice | nucleus | 28.78 | 35.98 |
| AT2G02070.2 | Thale cress | nucleus | 34.8 | 35.55 |
| Bra023223.1-P | Field mustard | plastid | 26.5 | 33.96 |
| CDY12268 | Canola | nucleus | 23.09 | 31.84 |
| CDY68983 | Canola | nucleus | 19.51 | 30.69 |
| Os07t0581366-00 | Rice | cytosol, nucleus | 28.29 | 27.44 |
| Os03t0237250-01 | Rice | plastid | 19.35 | 27.17 |
| Os08t0467100-01 | Rice | nucleus | 20.98 | 24.2 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:4330280 | ProteinID:BAD27855.1 | ProteinID:BAF09617.1 | ProteinID:BAS80239.1 |
| ProteinID:EEE57554.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR013087 |
| EnsemblPlantsGene:Os02g0672100 | EnsemblPlants:Os02t0672100-01 | PFAM:PF12171 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF56 | UniProt:Q6EU15 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00003CE52E | RefSeq:XP_015626115.1 |
| RefSeq:XP_015626116.1 | RefSeq:XP_015626117.1 | RefSeq:XP_015626118.1 | RefSeq:XP_015626119.1 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
INDETERMINATE DOMAIN 4, Suppressor of rid1, indeterminate domain 4C2H2-type zinc finger transcription factor, Promotion of flowering (Os02t0672100-01)
Coordinates
chr2:+:27316157..27325651
Molecular Weight (calculated)
63601.5 Da
IEP (calculated)
8.631
GRAVY (calculated)
-0.497
Length
615 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ AAVAAPPAKK KRTLPDPDAE VIALSPKTLL ATNRFVCEVC
101: NKGFQREQNL QLHRRGHNLP WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR
201: CDCGTLFSRR DSFITHRAFC DALAQESARL PPAAAGHLYG SAGAANMALS LSQVGSHLAS TLQDHGHHHH HHGASPDLLR FGGSGGGAMA ARLEHLLSSS
301: SASAFRPLPP PQQQPPAPFL LGAAPQGFGD GGDGSGPHGF LQGKPFHGLM QLPDLQGNGT GGPSPSGPGL YNLGYIANSA NSSGTSSHGH ASQGQMTNTD
401: QFSEGGGGGG GGGGSETSAA ALFGAGGNFS GGDHHQVSPA GMYANDQAMM LPQMSATALL QKAAQMGSST SSANGAGASV FGGGFAGSSA PSSIPHGRGT
501: TMVDQGQMHL QSLMNSLAGG GNADHQGMFG SGSMIDPRLY DMDQHEVKFS LQRGGGGGGD GDVTRDFLGV GGGGFMRGMS MARGEHHGGG GSDMHGTLEA
601: EMKSASSSFN GGRMQ
101: NKGFQREQNL QLHRRGHNLP WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR
201: CDCGTLFSRR DSFITHRAFC DALAQESARL PPAAAGHLYG SAGAANMALS LSQVGSHLAS TLQDHGHHHH HHGASPDLLR FGGSGGGAMA ARLEHLLSSS
301: SASAFRPLPP PQQQPPAPFL LGAAPQGFGD GGDGSGPHGF LQGKPFHGLM QLPDLQGNGT GGPSPSGPGL YNLGYIANSA NSSGTSSHGH ASQGQMTNTD
401: QFSEGGGGGG GGGGSETSAA ALFGAGGNFS GGDHHQVSPA GMYANDQAMM LPQMSATALL QKAAQMGSST SSANGAGASV FGGGFAGSSA PSSIPHGRGT
501: TMVDQGQMHL QSLMNSLAGG GNADHQGMFG SGSMIDPRLY DMDQHEVKFS LQRGGGGGGD GDVTRDFLGV GGGGFMRGMS MARGEHHGGG GSDMHGTLEA
601: EMKSASSSFN GGRMQ
001: MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH
101: RRGHNLPWKL KQKSNKEVRR KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTKEYRCDCG TIFSRRDSYI
201: THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ
301: GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ
401: QGRSPSLFDL HFANNLSMGG SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA
101: RRGHNLPWKL KQKSNKEVRR KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTKEYRCDCG TIFSRRDSYI
201: THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ
301: GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ
401: QGRSPSLFDL HFANNLSMGG SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA
Arabidopsis Description
C2H2-like zinc finger protein [Source:TAIR;Acc:AT1G14580]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.