Factsheet for Os04t0566400-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04118	Canola	nucleus	16.64	85.71
CDY09390	Canola	nucleus	16.48	84.87
TraesCS2B01G421100.1	Wheat	nucleus	82.06	82.19
EES11271	Sorghum	nucleus	79.28	81.14
Zm00001d026113_P006	Maize	nucleus	75.37	77.13
TraesCS2D01G400300.2	Wheat	nucleus	82.22	76.13
TraesCS2A01G403200.2	Wheat	nucleus	81.89	75.72
Zm00001d002654_P003	Maize	nucleus	77.65	75.2
Os02t0672100-01	Rice	nucleus	67.37	67.15
CDY53540	Canola	nucleus	21.04	66.49
CDY04117	Canola	nucleus	22.51	64.49
KRG89168	Soybean	nucleus, plastid	32.79	57.76
Os08t0554400-02	Rice	nucleus	41.76	46.72
Os09t0555700-02	Rice	nucleus	40.29	46.17
GSMUA_Achr10P...	Banana	nucleus	34.75	44.47
Os01t0242200-01	Rice	nucleus	30.02	44.34
VIT_01s0010g02100.t01	Wine grape	nucleus	40.46	43.36
KRH49489	Soybean	nucleus, plastid	37.36	42.96
KRG89167	Soybean	nucleus, plastid	37.85	42.26
CDY03081	Canola	nucleus	36.05	42.18
KRH49485	Soybean	nucleus	37.19	41.99
KRG90705	Soybean	nucleus	38.83	41.98
CDY17615	Canola	nucleus	35.89	41.75
CDY59418	Canola	nucleus	28.06	41.65
KRH36039	Soybean	nucleus	38.66	41.51
CDY17440	Canola	nucleus	31.65	40.59
CDY45271	Canola	nucleus	27.41	40.38
PGSC0003DMT400075837	Potato	nucleus	33.93	40.15
Bra024834.1-P	Field mustard	nucleus, plastid	35.89	39.86
KRH34792	Soybean	nucleus	36.05	39.82
Solyc04g008500.2.1	Tomato	nucleus	33.44	39.65
CDY15814	Canola	nucleus	30.51	39.53
AT2G02080.3	Thale cress	nucleus, plastid	33.28	39.53
Bra026819.1-P	Field mustard	nucleus	30.02	39.4
CDX81653	Canola	nucleus	30.02	39.4
KRG91985	Soybean	nucleus	35.89	39.29
Os01t0195000-01	Rice	nucleus	31.0	39.01
CDY09391	Canola	nucleus	36.05	38.98
CDY15811	Canola	nucleus	36.05	38.91
Bra026616.1-P	Field mustard	nucleus	32.14	38.55
CDY17614	Canola	nucleus, plastid	31.97	38.21
GSMUA_Achr11P...	Banana	nucleus	35.24	38.16
Bra024833.1-P	Field mustard	plastid	31.81	38.01
CDY45270	Canola	nucleus	27.9	38.0
Bra026204.1-P	Field mustard	nucleus, plastid	27.9	38.0
Os01t0572300-01	Rice	nucleus	33.28	37.99
Bra040974.1-P	Field mustard	nucleus, plastid	35.89	37.61
Bra026617.1-P	Field mustard	nucleus	36.05	37.46
AT1G14580.3	Thale cress	nucleus	29.36	37.42
CDY03080	Canola	nucleus, plastid	31.48	37.4
AT2G02070.2	Thale cress	nucleus	36.7	37.38
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	39.64	36.76
Os01t0935000-01	Rice	nucleus	28.39	36.55
Bra026203.1-P	Field mustard	nucleus, plastid	27.41	36.21
Os02t0518500-00	Rice	nucleus	29.04	36.18
Os03t0197800-00	Rice	nucleus	32.46	36.05
Os10t0419200-01	Rice	nucleus	27.57	35.58
Bra023223.1-P	Field mustard	plastid	26.75	34.17
CDY12268	Canola	nucleus	23.65	32.51
CDY68983	Canola	nucleus	19.25	30.18
Os07t0581366-00	Rice	cytosol, nucleus	28.39	27.44
Os03t0237250-01	Rice	plastid	19.58	27.4
Os08t0467100-01	Rice	nucleus	21.21	24.39

Protein Annotations

EnsemblPlants:Os04t0566400-02	EnsemblPlantsGene:Os04g0566400	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF63	PFAM:PF12171	PFscan:PS50157	ProteinID:BAS90528.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000393C202	UniProt:A0A0P0WDK4	MapMan:15.5.15	:

Description

indeterminate domain 10Similar to INDETERMINATE-related protein 9. (Os04t0566400-01);Similar to INDETERMINATE-related protein 9. (Os04t0566400-02)

Coordinates

chr4:+:28408910..28416001

Molecular Weight (calculated)

63818.1 Da

IEP (calculated)

9.936

GRAVY (calculated)

-0.476

Length

613 amino acids

Sequence
(BLAST)

001: MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQQQ QLAASLTGVA TAAPTAASSQ GAPPAAPPAK KKRNLPADPD AEVIALSPKT LLATNRFVCE
101: VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP AQAQRRRVYL CPEPTCVHHD PARALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHSKICGTRE
201: YRCDCGTLFS RRDSFITHRA FCDALAQESS RLPPTSLSSL TSHLYGASNA GNMALSLSQV GSHLTTSLQD GGGHHHHPSP ELLRLGGAGG GGGAGGGSSI
301: AARLDHLLSP SGASAFRPPQ PAFFLNAAAA AAATGQDFGD DAGNGQHSFL QAKPFHGLMQ LPDLQGNGAG GPGAPGPNLF NLGFFANNGN SSGSSHEHAS
401: QGLMSNDQFS CGAGGGGGLT RRRRGSPAVT SLVATMFLLQ GSTTIKRRCC RRCRRPALLQ KAAQMGATSS ANGPGSMFRG FVGSSPHMRP AAQHMDQSDA
501: HLNDLMNSLA GGGVNAAAMF GGTNGGGVPG AGMFDPRLCD IEHEVKFSQG GGGGGGAGAG TGDGTRDFLG VGGGGIVHGM STPRGDHHQS SSDMSSLEAE
601: MKSASSFNGR RMP

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.