Factsheet for Bra023223.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12268	Canola	nucleus	92.08	99.1
CDY68983	Canola	nucleus	76.67	94.12
Bra036013.1-P	Field mustard	nucleus	18.12	55.06
KRG89168	Soybean	nucleus, plastid	30.83	42.53
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	31.88	42.03
Bra026204.1-P	Field mustard	nucleus, plastid	36.46	38.89
Bra026203.1-P	Field mustard	nucleus, plastid	36.46	37.72
GSMUA_Achr3P13990_001	Banana	nucleus	33.12	37.32
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	30.21	36.43
GSMUA_Achr1P17940_001	Banana	nucleus	34.17	35.12
GSMUA_Achr9P23870_001	Banana	nucleus	31.67	35.02
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	35.21	34.49
GSMUA_Achr4P04310_001	Banana	nucleus	33.75	34.25
Bra026819.1-P	Field mustard	nucleus	33.12	34.05
GSMUA_Achr1P07110_001	Banana	nucleus	34.38	33.95
Bra033840.1-P	Field mustard	nucleus	31.46	33.33
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	33.75	33.13
KRH49489	Soybean	nucleus, plastid	36.46	32.83
GSMUA_Achr10P...	Banana	nucleus	32.5	32.57
Os09t0555700-02	Rice	nucleus	36.04	32.34
Bra036098.1-P	Field mustard	nucleus, plastid	29.17	32.11
AT1G14580.3	Thale cress	nucleus	32.08	32.02
VIT_01s0010g02100.t01	Wine grape	nucleus	38.12	31.99
Bra018535.1-P	Field mustard	plastid	26.88	31.93
TraesCS5A01G356100.1	Wheat	nucleus, plastid	36.25	31.93
KRG90705	Soybean	nucleus	37.71	31.92
TraesCS5B01G358600.1	Wheat	nucleus, plastid	36.25	31.87
TraesCS5D01G364900.1	Wheat	nucleus, plastid	36.25	31.81
KRH49485	Soybean	nucleus	35.83	31.68
KRH36039	Soybean	nucleus	37.29	31.35
Zm00001d021403_P001	Maize	nucleus	31.46	31.2
PGSC0003DMT400075837	Potato	nucleus	33.54	31.08
GSMUA_Achr11P...	Banana	nucleus	34.38	30.96
Solyc04g008500.2.1	Tomato	nucleus	33.33	30.95
KRG91985	Soybean	nucleus	35.83	30.71
KRH34792	Soybean	nucleus	35.42	30.63
Bra024833.1-P	Field mustard	plastid	32.71	30.6
KRG89167	Soybean	nucleus, plastid	35.0	30.6
GSMUA_Achr1P02080_001	Banana	nucleus	34.58	30.35
OQU89911	Sorghum	nucleus, plastid	33.54	30.21
Bra030886.1-P	Field mustard	nucleus	27.08	29.75
Bra026616.1-P	Field mustard	nucleus	31.67	29.75
GSMUA_Achr11P...	Banana	nucleus	34.79	29.51
Bra024834.1-P	Field mustard	nucleus, plastid	33.33	28.99
GSMUA_Achr11P...	Banana	nucleus	30.62	28.77
Bra026617.1-P	Field mustard	nucleus	35.0	28.47
Bra033724.1-P	Field mustard	nucleus	27.5	28.45
Os08t0554400-02	Rice	nucleus	32.29	28.28
GSMUA_Achr4P05240_001	Banana	nucleus	29.38	28.2
Bra040974.1-P	Field mustard	nucleus, plastid	34.17	28.03
KXG25416	Sorghum	nucleus	32.29	28.03
Bra015271.1-P	Field mustard	nucleus	28.12	28.01
Bra037151.1-P	Field mustard	nucleus	28.54	27.85
TraesCS6B01G271000.1	Wheat	nucleus	33.12	27.6
Bra032541.1-P	Field mustard	nucleus	28.12	27.55
Bra027394.1-P	Field mustard	nucleus	28.96	27.52
TraesCS6D01G235800.1	Wheat	nucleus	33.12	27.51
TraesCS6A01G254500.1	Wheat	nucleus	33.12	27.51
EES11271	Sorghum	nucleus	33.75	27.05
Bra021510.1-P	Field mustard	nucleus	28.54	26.86
TraesCS2B01G421100.1	Wheat	nucleus	34.17	26.8
Bra005741.1-P	Field mustard	nucleus	28.12	26.79
Os04t0566400-02	Rice	nucleus	34.17	26.75
Zm00001d017560_P001	Maize	nucleus	32.29	26.63
Zm00001d026113_P006	Maize	nucleus	33.12	26.54
Os02t0672100-01	Rice	nucleus	33.96	26.5
KXG31026	Sorghum	nucleus	32.29	26.05
Bra009549.1-P	Field mustard	nucleus	27.92	25.97
Zm00001d031992_P001	Maize	nucleus	32.5	25.79
Bra001523.1-P	Field mustard	nucleus	27.08	25.39
Zm00001d002654_P003	Maize	nucleus	33.33	25.28
TraesCS2D01G400300.2	Wheat	nucleus	34.38	24.92
TraesCS2A01G403200.2	Wheat	nucleus	34.38	24.89
Bra010981.1-P	Field mustard	nucleus	19.58	24.87
Zm00001d006319_P001	Maize	nucleus	28.96	24.87
Bra024771.1-P	Field mustard	nucleus	19.79	24.8
KXG36163	Sorghum	nucleus	29.79	24.57
Bra004283.1-P	Field mustard	nucleus	19.17	22.33
Bra024841.1-P	Field mustard	nucleus	20.62	22.3
Bra004050.1-P	Field mustard	nucleus	19.17	22.28
Bra017432.1-P	Field mustard	nucleus	20.21	22.05
Bra026624.1-P	Field mustard	nucleus	20.0	21.92
Bra038293.1-P	Field mustard	nucleus	30.21	16.37

Protein Annotations

EnsemblPlants:Bra023223.1	EnsemblPlants:Bra023223.1-P	EnsemblPlantsGene:Bra023223	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF50
PFAM:PF12874	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0002542366	UniProt:M4E372	MapMan:15.5.15	:	:	:

Description

AT1G14580 (E=2e-093) | zinc finger (C2H2 type) family protein

Coordinates

chrA09:-:20520547..20523792

Molecular Weight (calculated)

52622.2 Da

IEP (calculated)

10.039

GRAVY (calculated)

-0.821

Length

480 amino acids

Sequence
(BLAST)

001: MSSSYSQSIP LIATGANNFN QKEMEMTMTQ KRNTFVSPSL RKQRNQPGNR NPDAEVIALS PKTIMATNRF LCEVCNRGFN REQNLQLHGR VHNLPWKPKQ
101: KSEKEARRKV FICPEPTCVH HDPSHALRDF TGIKKHYYRK HGEKQWKCDK CPKSYALQSD WKTHSKICGI KVHRCDCGTT FSRRENYNAH KALCDALNQE
201: SGRNPTGSIT NMAAAAGGSD GRQDFYGGAA SALGRLQDFY ACAASALGRQ DFYGGAASAL GRHGFYRGAA SALSHNQFGN NSNTGYNLNR SSSNKFEGFV
301: PHPTNPNPGP TNFPMQCPSN QASLAHNDQS LRSQHDLISL GARINNNNNN TNHGYFQNNT KTSNQTLFAH GADINDPSVW QRGLTPSSSS GVVVNGFGDN
401: DKGNLQGRMN SLAMTTNQQG WSASNIFGPH FGNNLSMGGS DVLTLGVNGG SVSKGRGDRN PAPLDTQMKF AYPNRPFGNP

Best Arabidopsis Sequence Match ( AT1G14580.3 )
(BLAST)

001: MDLCSFSKNR PAEKMSSSYN TIALSSTPTF LLSSAAAGPG PNNFNRQEAA MTMVQQQPTS SVAPPPKKRR NQPGNPNPDA EVIALSPKTI MATNRFLCEV
101: CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EVRRKVYLCP EPSCVHHDPA RALGDLTGIK KHYYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR
201: CDCGTIFSRR DSYITHRAFC DALIQESARN PTVSFTAMAA GGGGGARHGF YGGASSALSH NHFGNNPNSG FTPLAAAGYN LNRSSSDKFE DFVPQATNPN
301: PGPTNFLMQC SPNQGLLAQN NQSLMNHHGL ISLGDNNNNN HNFFNLAYFQ DTKNSDQTGV PSLFTNGADN NGPSALLRGL TSSSSSSVVV NDFGDCDHGN
401: LQGLMNSLAA TTDQQGRSPS LFDLHFANNL SMGGSDRLTL DFLGVNGGIV STVNGRGGRS GGPPLDAEMK FSHPNHPYGK A

Arabidopsis Description

C2H2-like zinc finger protein [Source:TAIR;Acc:AT1G14580]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.