Factsheet for Bra001523.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82515	Canola	nucleus	85.55	99.32
Bra021510.1-P	Field mustard	nucleus	86.33	86.67
Bra027394.1-P	Field mustard	nucleus	83.98	85.15
AT3G13810.2	Thale cress	nucleus	79.88	79.57
Bra036013.1-P	Field mustard	nucleus	20.7	67.09
Bra030886.1-P	Field mustard	nucleus	55.86	65.45
Bra018535.1-P	Field mustard	plastid	33.01	41.83
Bra036098.1-P	Field mustard	nucleus, plastid	33.79	39.68
Bra015271.1-P	Field mustard	nucleus	36.52	38.8
Bra032541.1-P	Field mustard	nucleus	36.91	38.57
Bra033724.1-P	Field mustard	nucleus	34.57	38.15
Bra033840.1-P	Field mustard	nucleus	32.62	36.87
VIT_09s0002g02300.t01	Wine grape	nucleus	38.28	36.84
Bra005741.1-P	Field mustard	nucleus	35.55	36.11
Bra009549.1-P	Field mustard	nucleus	35.35	35.08
Bra037151.1-P	Field mustard	nucleus	33.59	34.96
Bra024834.1-P	Field mustard	nucleus, plastid	37.11	34.42
Bra026819.1-P	Field mustard	nucleus	30.66	33.62
Bra024833.1-P	Field mustard	plastid	33.59	33.53
Bra026616.1-P	Field mustard	nucleus	33.4	33.46
Bra026204.1-P	Field mustard	nucleus, plastid	28.12	32.0
Bra026617.1-P	Field mustard	nucleus	36.72	31.86
Bra040974.1-P	Field mustard	nucleus, plastid	36.13	31.62
Bra026203.1-P	Field mustard	nucleus, plastid	28.12	31.03
Bra024771.1-P	Field mustard	nucleus	21.09	28.2
Bra010981.1-P	Field mustard	nucleus	20.31	27.51
Bra023223.1-P	Field mustard	plastid	25.39	27.08
Bra004283.1-P	Field mustard	nucleus	21.48	26.7
Bra026624.1-P	Field mustard	nucleus	22.66	26.48
Bra004050.1-P	Field mustard	nucleus	21.29	26.39
Bra017432.1-P	Field mustard	nucleus	22.07	25.68
Bra024841.1-P	Field mustard	nucleus	22.27	25.68
Bra038293.1-P	Field mustard	nucleus	31.84	18.4

Protein Annotations

EnsemblPlants:Bra001523.1	EnsemblPlants:Bra001523.1-P	EnsemblPlantsGene:Bra001523	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF49
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00025408FB
UniProt:M4CBE3	MapMan:15.5.15	:	:	:	:

Description

AT3G13810 (E=3e-195) AtIDD11 | AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA03:+:16840953..16843408

Molecular Weight (calculated)

56985.4 Da

IEP (calculated)

8.938

GRAVY (calculated)

-0.894

Length

512 amino acids

Sequence
(BLAST)

001: MMSKDILLHQ QVQQQQQEEN MSNLTSASGD QTSVSSGNRT EASGSNYFPH HQQQQQQQQQ QQFFVPESQP QKKRRNQPGN PDPESEVIAL SPKTLMARNR
101: FVCEICNKGF QRDQNLQLHK RGHNLPWKLK QRSNKEVIRK KVYVCPEASC VHHDPTRALG DLTGIKKHFC RKHGDKKWKC DKCSKKYAVQ SDCKAHSKTC
201: GTKEYRCDCG TIFSRRDSFT THRAFCEALA KETAREVVIP QEQNHQPNPI LVHQSTFHHQ HHHQAQPNMN FSSSSPSSHN IINTLHFEIN NNGTNNSNTS
301: SNHLHTFSVK KEQQQSNDHI INYHHQNIPP WLAPQDLTFS NPNPNNGGGG LFSLAASPAM SATALLQKAA QMGSKKTPPL PPTTDFERSA HHNTLTTTMA
401: AMMTSPSGYI SSNNNNQVLF QGYNASDFDH HGGEEAFDDT FSAFLRTNAD TTTAGSDKKK SGGGGGVGEG LTRDFLGIRP LMSHNEILSI AGLGNCISGA
501: ASNQLHPKPW QG

Best Arabidopsis Sequence Match ( AT3G13810.4 )
(BLAST)

001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG

Arabidopsis Description

AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.