Factsheet for Bra040974.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04117	Canola	nucleus	35.21	96.26
Bra024834.1-P	Field mustard	nucleus, plastid	82.39	87.32
AT2G02070.2	Thale cress	nucleus	89.4	86.88
Bra026617.1-P	Field mustard	nucleus	87.01	86.27
Bra036013.1-P	Field mustard	nucleus	18.29	67.72
KRG89168	Soybean	nucleus, plastid	30.43	51.15
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	31.45	50.55
Bra026616.1-P	Field mustard	nucleus	43.25	49.51
Bra024833.1-P	Field mustard	plastid	42.39	48.34
Bra026819.1-P	Field mustard	nucleus	38.12	47.75
GSMUA_Achr3P13990_001	Banana	nucleus	33.85	46.48
Bra033724.1-P	Field mustard	nucleus	35.9	45.26
Bra015271.1-P	Field mustard	nucleus	37.09	45.02
GSMUA_Achr1P17940_001	Banana	nucleus	35.56	44.54
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	30.09	44.22
Bra032541.1-P	Field mustard	nucleus	36.07	43.06
GSMUA_Achr10P...	Banana	nucleus	34.7	42.38
Bra018535.1-P	Field mustard	plastid	29.23	42.33
Bra036098.1-P	Field mustard	nucleus, plastid	31.11	41.74
Bra030886.1-P	Field mustard	nucleus	31.11	41.65
GSMUA_Achr1P07110_001	Banana	nucleus	34.53	41.56
KRH49489	Soybean	nucleus, plastid	36.92	40.53
Bra033840.1-P	Field mustard	nucleus	31.28	40.4
GSMUA_Achr9P23870_001	Banana	nucleus	29.74	40.09
KRH49485	Soybean	nucleus	37.09	39.96
KRG90705	Soybean	nucleus	38.63	39.86
PGSC0003DMT400075837	Potato	nucleus	35.21	39.77
GSMUA_Achr4P04310_001	Banana	nucleus	32.14	39.75
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	33.16	39.67
KRH36039	Soybean	nucleus	38.63	39.58
Os09t0555700-02	Rice	nucleus	36.07	39.44
KRG89167	Soybean	nucleus, plastid	36.92	39.34
VIT_01s0010g02100.t01	Wine grape	nucleus	38.46	39.34
KRH34792	Soybean	nucleus	37.27	39.28
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	32.48	38.78
Solyc04g008500.2.1	Tomato	nucleus	34.02	38.49
Bra021510.1-P	Field mustard	nucleus	33.5	38.43
KRG91985	Soybean	nucleus	36.58	38.21
Bra027394.1-P	Field mustard	nucleus	32.82	38.02
Bra009549.1-P	Field mustard	nucleus	33.5	37.98
Bra005741.1-P	Field mustard	nucleus	32.65	37.9
TraesCS5B01G358600.1	Wheat	nucleus, plastid	35.21	37.73
TraesCS5D01G364900.1	Wheat	nucleus, plastid	35.21	37.66
TraesCS5A01G356100.1	Wheat	nucleus, plastid	35.04	37.61
Bra026204.1-P	Field mustard	nucleus, plastid	28.72	37.33
EES11271	Sorghum	nucleus	38.12	37.23
GSMUA_Achr1P02080_001	Banana	nucleus	34.7	37.11
Bra037151.1-P	Field mustard	nucleus	31.11	36.99
TraesCS2B01G421100.1	Wheat	nucleus	38.63	36.93
Zm00001d017560_P001	Maize	nucleus	36.58	36.77
KXG25416	Sorghum	nucleus	34.53	36.53
Os08t0554400-02	Rice	nucleus	34.19	36.5
GSMUA_Achr11P...	Banana	nucleus	33.16	36.4
Zm00001d026113_P006	Maize	nucleus	37.27	36.39
Zm00001d021403_P001	Maize	nucleus	29.91	36.16
KXG31026	Sorghum	nucleus	36.75	36.13
Bra001523.1-P	Field mustard	nucleus	31.62	36.13
TraesCS6B01G271000.1	Wheat	nucleus	35.38	35.94
Os04t0566400-02	Rice	nucleus	37.61	35.89
OQU89911	Sorghum	nucleus, plastid	32.65	35.83
TraesCS6D01G235800.1	Wheat	nucleus	35.38	35.81
GSMUA_Achr4P05240_001	Banana	nucleus	30.6	35.8
TraesCS6A01G254500.1	Wheat	nucleus	35.21	35.64
GSMUA_Achr11P...	Banana	nucleus	30.94	35.42
Zm00001d002654_P003	Maize	nucleus	37.78	34.91
Bra026203.1-P	Field mustard	nucleus, plastid	27.35	34.48
Os02t0672100-01	Rice	nucleus	36.24	34.47
Bra023223.1-P	Field mustard	plastid	28.03	34.17
TraesCS2D01G400300.2	Wheat	nucleus	38.63	34.14
TraesCS2A01G403200.2	Wheat	nucleus	38.63	34.09
Zm00001d031992_P001	Maize	nucleus	34.53	33.39
GSMUA_Achr11P...	Banana	nucleus	30.94	31.98
KXG36163	Sorghum	nucleus	29.74	29.9
Bra010981.1-P	Field mustard	nucleus	18.63	28.84
Bra024771.1-P	Field mustard	nucleus	18.63	28.46
Bra004283.1-P	Field mustard	nucleus	19.32	27.43
Zm00001d006319_P001	Maize	nucleus	25.98	27.19
Bra026624.1-P	Field mustard	nucleus	20.17	26.94
Bra004050.1-P	Field mustard	nucleus	18.97	26.88
Bra017432.1-P	Field mustard	nucleus	20.17	26.82
Bra024841.1-P	Field mustard	nucleus	20.17	26.58
Bra038293.1-P	Field mustard	nucleus	30.43	20.09

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra040974	EnsemblPlants:Bra040974.1	EnsemblPlants:Bra040974.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	UniProt:M4FIP5	PFAM:PF12171
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF50	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000253EB49	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

AT2G02070 (E=3e-242) AtIDD5 | AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrScaffold000348:+:4982..8645

Molecular Weight (calculated)

62908.6 Da

IEP (calculated)

9.366

GRAVY (calculated)

-0.761

Length

585 amino acids

Sequence
(BLAST)

001: MAASSSSAAS FFGVQQDDQS HILPPNSSAT APPLLTHHQP PQSQQPLDAP PQKKKRNQPR TPNSDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH
101: RRGHNLPWKL KQKSTKEVKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYY RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTKEYRCDCG TLFSRRDSFI
201: THRAFCDALA QESARHPTSL TSLPSHHFPY GQNTNNSNNT SSMILGLSHM GPSQNLDHQS GDRLRLGSSG GGGAGAASRS SSDLIAANAS GYFMQEQNPS
301: FHDQQDHHHQ GFLAASNNIK PSPMNFQQSL MQFSHDNHNC PSSNVFNLSF LSGRNGVASA TSNPNAAAVS SGNLMISNNF DGENAVRGGG GEGEGSTGLF
401: PNNLMTSADR ISTGAVPSLF SSSMQNPNST THMSATALLQ KAAQIGSSSS NNNNSNNASS ILRSFGSGMY GESESSLNDL MNSFSNPGAT GNNVNRVDSP
501: FGSYGGVNKG LNADKQSMTR DFLGVGQIVR SMSESGGFQQ QQQQHGNSTE RVGSSSDSAD RNSINVNPGG GPASSPPYGI HRASF

Best Arabidopsis Sequence Match ( AT2G02070.1 )
(BLAST)

001: MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP QKKKRNQPRT PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF

Arabidopsis Description

IDD5Protein indeterminate-domain 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.