Factsheet for Bra015271.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005741.1-P
Bra007056.1-P
Bra009549.1-P
Bra010606.1-P
Bra011777.1-P
Bra017842.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	Bra007056.1-P	AT3G54220.1	17785527
AT1G03840.1	Bra010606.1-P	AT4G37650.1	17785527
AT1G03840.1	Bra011777.1-P	AT4G37650.1	17785527
AT1G03840.1	Bra017842.1-P	AT4G37650.1	17785527
AT1G03840.1	Bra005741.1-P	AT5G03150.1	17785527
AT1G03840.1	Bra009549.1-P	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89862	Canola	nucleus	98.96	99.38
Bra032541.1-P	Field mustard	nucleus	85.06	83.67
AT1G03840.1	Thale cress	nucleus	86.72	82.61
Bra036013.1-P	Field mustard	nucleus	25.1	76.58
Bra033724.1-P	Field mustard	nucleus	62.24	64.66
Zm00001d039254_P001	Maize	nucleus	42.53	57.91
Os01t0242200-01	Rice	nucleus	49.59	57.59
GSMUA_Achr7P14780_001	Banana	nucleus	41.7	56.3
PGSC0003DMT400024272	Potato	nucleus	52.28	50.91
GSMUA_Achr9P06650_001	Banana	nucleus	38.38	50.41
Solyc07g053570.2.1	Tomato	nucleus	51.87	49.8
TraesCS3B01G195900.1	Wheat	nucleus	50.41	49.49
TraesCS3A01G170700.1	Wheat	nucleus	50.0	49.28
EES02157	Sorghum	nucleus	49.17	49.27
TraesCS3D01G171300.1	Wheat	nucleus	50.0	49.08
GSMUA_Achr10P...	Banana	nucleus	38.38	49.07
VIT_12s0028g03030.t01	Wine grape	nucleus	42.12	47.54
GSMUA_Achr6P27030_001	Banana	nucleus	34.65	47.18
Zm00001d009030_P002	Maize	nucleus	40.46	43.62
KRH22332	Soybean	nucleus	42.53	43.25
Bra030886.1-P	Field mustard	nucleus	38.38	42.33
Bra036098.1-P	Field mustard	nucleus, plastid	38.17	42.2
KRH26995	Soybean	nucleus	41.91	42.08
Bra018535.1-P	Field mustard	plastid	35.27	42.08
Bra033840.1-P	Field mustard	nucleus	37.55	39.96
Bra024834.1-P	Field mustard	nucleus, plastid	45.44	39.67
Bra005741.1-P	Field mustard	nucleus	40.25	38.49
Bra027394.1-P	Field mustard	nucleus	40.04	38.22
Bra021510.1-P	Field mustard	nucleus	40.25	38.04
Bra009549.1-P	Field mustard	nucleus	40.04	37.4
Bra037151.1-P	Field mustard	nucleus	38.17	37.4
Bra040974.1-P	Field mustard	nucleus, plastid	45.02	37.09
Bra024833.1-P	Field mustard	plastid	39.42	37.04
Bra026617.1-P	Field mustard	nucleus	45.23	36.95
Bra026616.1-P	Field mustard	nucleus	39.0	36.79
Bra001523.1-P	Field mustard	nucleus	38.8	36.52
Bra026819.1-P	Field mustard	nucleus	35.06	36.19
Bra026204.1-P	Field mustard	nucleus, plastid	31.54	33.78
Bra026203.1-P	Field mustard	nucleus, plastid	30.91	32.11
Bra010981.1-P	Field mustard	nucleus	23.24	29.63
Bra024771.1-P	Field mustard	nucleus	23.44	29.5
Bra004283.1-P	Field mustard	nucleus	24.48	28.64
Bra023223.1-P	Field mustard	plastid	28.01	28.12
Bra004050.1-P	Field mustard	nucleus	24.07	28.09
Bra026624.1-P	Field mustard	nucleus	24.48	26.94
Bra017432.1-P	Field mustard	nucleus	24.48	26.82
Bra024841.1-P	Field mustard	nucleus	24.69	26.8
Os07t0581366-00	Rice	cytosol, nucleus	33.61	25.55
Zm00001d006682_P001	Maize	nucleus	35.27	22.91
EER97442	Sorghum	nucleus	35.68	21.94
TraesCS2B01G218900.1	Wheat	nucleus	35.48	21.32
Zm00001d021932_P001	Maize	nucleus	35.89	21.23
TraesCS2A01G188400.2	Wheat	nucleus	35.68	20.72
TraesCS2D01G199300.3	Wheat	nucleus	35.48	20.24
Bra038293.1-P	Field mustard	nucleus	37.14	20.2
HORVU2Hr1G036710.3	Barley	nucleus	30.5	16.94

Protein Annotations

EnsemblPlants:Bra015271.1	EnsemblPlants:Bra015271.1-P	EnsemblPlantsGene:Bra015271	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26
PFAM:PF00096	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0002544283	UniProt:M4DFJ8	MapMan:15.5.15	:	:	:

Description

AT1G03840 (E=3e-190) MGP | MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding

Coordinates

chrA10:+:2781615..2783772

Molecular Weight (calculated)

53074.2 Da

IEP (calculated)

8.211

GRAVY (calculated)

-0.618

Length

482 amino acids

Sequence
(BLAST)

001: MTAEDQTISS SGGYVQSSST TDHVDHHHEL ESFNPPPAKK KRNLPGNPDP EAEVIALSPT TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT
101: TKEVRKRVYV CPEKSCVHHH PTRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTVFS RRDSFITHRA FCDALAEETA
201: RLNAASHLKS LTSNNLNYHY LMGTLIPSPA PPPPFPFGPP QPLQPHHFPI TTNTFDHHHH DVMKPASSLS LWMGGNNNHH QVTVDEGISP QDDYNWVFGN
301: ANNRGELITT SDSLITHENI NIVSSKENAN AATSLSVPSV FSSVDHITQD ANAASSAVAN MSATALLQKA AQMGVTSSTP TTITTNQSTF HQIVEEGGSD
401: KFFALFGPNS VGLMSKNGLQ HEIENPRNGV TVASGIDELQ NYPLKRRRVE SGDAGGGGGQ TRDFLGVGVQ TMCHSSSING WI

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.