Factsheet for Zm00001d009030_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d006721_P001
Zm00001d007407_P006
Zm00001d011881_P001
Zm00001d021973_P001
Zm00001d023247_P001
Zm00001d023248_P001
Zm00001d029607_P001
Zm00001d031678_P003
Zm00001d037901_P001
Zm00001d042127_P001
Zm00001d052380_P001
Zm00001d052463_P001
Zm00001d052464_P001
Zm00001d052666_P014
Zm00001d052695_P016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	Zm00001d005029_P001	AT3G54220.1	17785527
AT1G03840.1	Zm00001d052380_P001	AT3G54220.1	17785527
AT1G03840.1	Zm00001d006721_P001	AT4G37650.1	17785527
AT1G03840.1	Zm00001d021973_P001	AT4G37650.1	17785527
AT1G03840.1	Zm00001d029607_P001	AT4G37650.1	17785527
AT5G44160.1	Zm00001d011881_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d023247_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d023248_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d037901_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d042127_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d052463_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d052464_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d007407_P006	AT3G12280.1	22921914
AT5G44160.1	Zm00001d031678_P003	AT3G12280.1	22921914
AT5G44160.1	Zm00001d052666_P014	AT3G12280.1	22921914
AT5G44160.1	Zm00001d052695_P016	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14910	Canola	nucleus	22.82	76.69
CDY72283	Canola	nucleus	30.2	71.43
Bra036013.1-P	Field mustard	nucleus	24.83	70.25
Zm00001d039254_P001	Maize	nucleus	42.73	53.95
Os01t0242200-01	Rice	nucleus	47.65	51.33
VIT_12s0028g03030.t01	Wine grape	nucleus	47.87	50.12
EES02157	Sorghum	nucleus	48.77	45.32
TraesCS3A01G170700.1	Wheat	nucleus	47.43	43.35
KRH25657	Soybean	nucleus	45.19	42.89
TraesCS3B01G195900.1	Wheat	nucleus	46.98	42.77
KRH55868	Soybean	nucleus	45.19	42.62
KRH22332	Soybean	nucleus	45.19	42.62
TraesCS3D01G171300.1	Wheat	nucleus	46.31	42.16
KRH49655	Soybean	nucleus	34.0	41.99
KRH26995	Soybean	nucleus	44.74	41.67
AT5G44160.1	Thale cress	nucleus	42.51	40.77
Bra015271.1-P	Field mustard	nucleus	43.62	40.46
CDX89862	Canola	nucleus	43.4	40.42
CDX94759	Canola	nucleus	41.83	40.3
CDY18188	Canola	nucleus	42.95	40.08
Bra033724.1-P	Field mustard	nucleus	41.39	39.87
Bra032541.1-P	Field mustard	nucleus	43.62	39.8
CDY32514	Canola	nucleus	43.62	39.8
CDY22307	Canola	nucleus	41.16	39.66
Zm00001d008842_P001	Maize	nucleus	40.04	38.33
AT1G03840.1	Thale cress	nucleus	43.18	38.14
Zm00001d039467_P001	Maize	nucleus	41.83	37.63
Zm00001d032922_P001	Maize	nucleus	36.69	37.61
PGSC0003DMT400024272	Potato	nucleus	40.72	36.77
Solyc07g053570.2.1	Tomato	nucleus	40.94	36.45
Zm00001d011223_P002	Maize	nucleus	37.14	35.47
Zm00001d028139_P001	Maize	nucleus	42.06	34.88
Zm00001d044261_P001	Maize	nucleus	37.36	34.79
Zm00001d021403_P001	Maize	nucleus	36.69	33.88
Zm00001d042202_P001	Maize	nucleus	38.7	32.95
Zm00001d016632_P001	Maize	nucleus	36.24	31.89
Zm00001d017560_P001	Maize	nucleus	40.04	30.76
Zm00001d026113_P006	Maize	nucleus	40.27	30.05
Zm00001d031992_P001	Maize	nucleus	40.49	29.92
Zm00001d002654_P003	Maize	nucleus	40.04	28.28
Zm00001d005871_P002	Maize	nucleus	27.29	27.66
Zm00001d028361_P001	Maize	nucleus, plastid	27.52	27.21
Zm00001d006319_P001	Maize	nucleus	34.0	27.19
Zm00001d047976_P001	Maize	nucleus, plastid	27.07	27.01
Zm00001d020683_P001	Maize	nucleus	27.96	25.15
Zm00001d031759_P001	Maize	nucleus	28.64	24.71
Zm00001d006682_P001	Maize	nucleus	39.37	23.72
Zm00001d021932_P001	Maize	nucleus	39.6	21.72

Protein Annotations

EntrezGene:103635024	MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A0A1D6FHC4	ProteinID:AQK91230.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR10593	PANTHER:PTHR10593:SF26	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00084533AA	EnsemblPlantsGene:Zm00001d009030
EnsemblPlants:Zm00001d009030_P002	EnsemblPlants:Zm00001d009030_T002	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

DNA binding protein%2C mRNA

Coordinates

chr8:+:30790522..30791908

Molecular Weight (calculated)

47172.2 Da

IEP (calculated)

9.297

GRAVY (calculated)

-0.254

Length

447 amino acids

Sequence
(BLAST)

001: MASEAAAASV ISRNPCLFAP PLITNQQQPS HQEPQQEMPL PPPAKKKRNL PGTPGKLLAS SSCIDPAAEV IALSPRTLLA TNRFVCEICG KGFQRDQNLQ
101: LHRRGHNLPW KLRQRSAGKE PRKRVYVCPE KTCVHHNPCR ALGDLTGIKK HFCRKHGEKK WKCDKCNKRY AVQSDWKAHA KTCGTREYRC DCGTLFSRRD
201: SFITHRAFCD ALAEETARQL NAAAAATSHL NNNAHVVVGL SLPSMVGHIN GATGSILLPG APPQLYADLF APAPPQLSWP CELTSAAAAA SSSAAASGKQ
301: KTDSVPSVFS GYPHANLAVP GAGAADMSAT ALLQKAAQMG AVTSGSGSVI MTTTAGGHHQ PSDCGAGLLF SALTQQNATN LISGSGTSTL TTSQLTATGG
401: NMPYDVLSAV RHAGLKDAAV AVGREETRDF LGVGVQALCS SSLNGWI

Best Arabidopsis Sequence Match ( AT5G44160.1 )
(BLAST)

001: MTSEVLQTIS SGSGFAQPQS SSTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPTTL MATNRFLCEV CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK
101: EVRKRVYVCP EKTCVHHHSS RALGDLTGIK KHFCRKHGEK KWTCEKCAKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETAKI
201: NAVSHLNGLA AAGAPGSVNL NYQYLMGTFI PPLQPFVPQP QTNPNHHHQH FQPPTSSSLS LWMGQDIAPP QPQPDYDWVF GNAKAASACI DNNNTHDEQI
301: TQNANASLTT TTTLSAPSLF SSDQPQNANA NSNVNMSATA LLQKAAEIGA TSTTTAATND PSTFLQSFPL KSTDQTTSYD SGEKFFALFG SNNNIGLMSR
401: SHDHQEIENA RNDVTVASAL DELQNYPWKR RRVDGGGEVG GGGQTRDFLG VGVQTLCHPS SINGWI

Arabidopsis Description

NUCZinc finger protein NUTCRACKER [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.