Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033724.1-P | Field mustard | nucleus | 97.41 | 97.41 |
| CDY22307 | Canola | nucleus | 97.41 | 97.41 |
| CDY14910 | Canola | nucleus | 25.86 | 90.23 |
| AT5G44160.1 | Thale cress | nucleus | 85.56 | 85.19 |
| CDY09390 | Canola | nucleus | 21.12 | 82.35 |
| CDY04118 | Canola | nucleus | 21.12 | 82.35 |
| CDY72283 | Canola | nucleus | 32.11 | 78.84 |
| CDY37489 | Canola | nucleus | 26.94 | 67.93 |
| CDY53540 | Canola | nucleus | 27.37 | 65.46 |
| CDY18188 | Canola | nucleus | 64.22 | 62.21 |
| CDX89862 | Canola | nucleus | 64.22 | 62.08 |
| CDY04117 | Canola | nucleus | 28.45 | 61.68 |
| CDY32514 | Canola | nucleus | 65.09 | 61.63 |
| GSMUA_Achr7P14780_001 | Banana | nucleus | 42.89 | 55.74 |
| CDY70142 | Canola | nucleus | 21.55 | 54.95 |
| Zm00001d039254_P001 | Maize | nucleus | 41.59 | 54.52 |
| Os01t0242200-01 | Rice | nucleus | 48.06 | 53.73 |
| PGSC0003DMT400024272 | Potato | nucleus | 54.74 | 51.31 |
| Solyc07g053570.2.1 | Tomato | nucleus | 54.31 | 50.2 |
| GSMUA_Achr10P... | Banana | nucleus | 39.87 | 49.07 |
| GSMUA_Achr9P06650_001 | Banana | nucleus | 37.72 | 47.68 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 49.35 | 46.64 |
| TraesCS3A01G170700.1 | Wheat | nucleus | 48.92 | 46.42 |
| VIT_12s0028g03030.t01 | Wine grape | nucleus | 42.67 | 46.37 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 48.92 | 46.23 |
| EES02157 | Sorghum | nucleus | 47.63 | 45.95 |
| CDX96046 | Canola | nucleus | 22.84 | 45.49 |
| GSMUA_Achr6P27030_001 | Banana | nucleus | 33.62 | 44.07 |
| CDX97281 | Canola | nucleus, plastid | 35.13 | 42.34 |
| KRH22332 | Soybean | nucleus | 43.1 | 42.19 |
| Zm00001d009030_P002 | Maize | nucleus | 40.3 | 41.83 |
| CDY24490 | Canola | nucleus | 38.58 | 41.15 |
| CDX77936 | Canola | nucleus | 38.58 | 41.05 |
| KRH26995 | Soybean | nucleus | 42.46 | 41.04 |
| CDX75732 | Canola | nucleus | 38.58 | 40.41 |
| CDY59418 | Canola | nucleus | 35.78 | 40.19 |
| CDX91304 | Canola | nucleus, plastid | 34.7 | 39.85 |
| CDX82515 | Canola | nucleus | 37.28 | 39.23 |
| CDY17615 | Canola | nucleus | 43.75 | 38.52 |
| CDY03081 | Canola | nucleus | 43.32 | 38.36 |
| CDY53836 | Canola | nucleus | 37.28 | 38.19 |
| CDX86010 | Canola | nucleus | 36.64 | 37.95 |
| CDX97521 | Canola | nucleus | 39.66 | 37.94 |
| CDX81653 | Canola | nucleus | 38.15 | 37.9 |
| CDY17440 | Canola | nucleus | 39.01 | 37.87 |
| CDY51742 | Canola | nucleus | 39.44 | 37.81 |
| CDY55238 | Canola | nucleus | 39.22 | 37.45 |
| CDY67009 | Canola | nucleus | 38.36 | 37.4 |
| CDY15814 | Canola | nucleus | 37.72 | 37.0 |
| CDY09391 | Canola | nucleus | 45.04 | 36.86 |
| CDY17614 | Canola | nucleus, plastid | 40.73 | 36.84 |
| CDY57128 | Canola | nucleus | 39.01 | 36.79 |
| CDY15811 | Canola | nucleus | 44.83 | 36.62 |
| CDX81372 | Canola | nucleus | 38.58 | 36.61 |
| CDY03080 | Canola | nucleus, plastid | 40.3 | 36.24 |
| CDY44344 | Canola | nucleus | 39.01 | 36.2 |
| CDY11241 | Canola | nucleus | 38.79 | 35.79 |
| CDY10404 | Canola | nucleus | 38.79 | 35.5 |
| CDX80854 | Canola | nucleus | 38.58 | 35.45 |
| CDX70328 | Canola | nucleus | 38.58 | 34.82 |
| CDY45271 | Canola | nucleus | 31.03 | 34.62 |
| CDY45270 | Canola | nucleus | 32.54 | 33.56 |
| CDY04204 | Canola | nucleus | 23.49 | 30.36 |
| CDX84974 | Canola | nucleus | 25.0 | 30.29 |
| CDY51986 | Canola | nucleus | 24.57 | 30.16 |
| CDY36123 | Canola | nucleus | 24.57 | 30.16 |
| CDY60366 | Canola | nucleus | 24.78 | 30.03 |
| CDY04203 | Canola | plastid | 24.35 | 29.35 |
| CDY07400 | Canola | nucleus | 25.0 | 28.09 |
| CDY67587 | Canola | cytosol, nucleus | 13.58 | 28.0 |
| CDY70938 | Canola | cytosol, nucleus | 15.73 | 26.74 |
| CDY09400 | Canola | nucleus | 25.22 | 26.71 |
| CDY17620 | Canola | nucleus | 25.22 | 26.35 |
| CDY04102 | Canola | nucleus | 25.43 | 26.28 |
| CDY15800 | Canola | nucleus | 25.0 | 26.24 |
| CDY63960 | Canola | nucleus | 25.43 | 26.16 |
| Os07t0581366-00 | Rice | cytosol, nucleus | 35.56 | 26.03 |
| CDY60095 | Canola | nucleus | 24.78 | 26.02 |
| CDY12268 | Canola | nucleus | 24.78 | 25.78 |
| Zm00001d006682_P001 | Maize | nucleus | 37.93 | 23.72 |
| CDY68983 | Canola | nucleus | 19.83 | 23.53 |
| EER97442 | Sorghum | nucleus | 37.93 | 22.45 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 37.72 | 21.82 |
| Zm00001d021932_P001 | Maize | nucleus | 38.15 | 21.72 |
| TraesCS2A01G188400.2 | Wheat | nucleus | 37.72 | 21.08 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 37.5 | 20.59 |
| HORVU2Hr1G036710.3 | Barley | nucleus | 32.11 | 17.17 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078E2B1 | EnsemblPlants:CDX94759 | ProteinID:CDX94759 | ProteinID:CDX94759.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00158200001 | InterPro:IPR013087 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF26 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EDF925 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
BnaC07g17680D
Coordinates
chrLK031884:+:868466..870785
Molecular Weight (calculated)
50636.3 Da
IEP (calculated)
8.486
GRAVY (calculated)
-0.607
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGEVLKTVS SGSAAFAPSS STLDHDESLI NPPLVKKKRN LPGNPDPEAE VIALSPKTLM ATNRFLCEVC GKGFQRDQNL QLHRRGHNLP WKLKQRTSKE
101: VRKRVYVCPE KTCVHHDPAR ALGDLTGIKK HFCRKHGEKK WTCEKCAKRY AVHSDYKAHS KTCGTREYRC DCGTIFSRRD SFITHRAFCD ALAEETAKIN
201: AASHLNGLSA AGTVGMNLNY QYLMGTLNPP LQPFEPQPPT NQNHHHHFLP PPPSSSSSLS LWMGQDIAPT SQTQPQDYEW VFANAKAASG CINNNNHNDL
301: ITQTANASST TTATLSVPSL FSSDQTQSLN ANVNMSATAL LQKAAEIGAN STTATTTNPS AFLKSFPQKS SDQTTTGYDG GEKFFALFGT NNNIGVVSNS
401: HDQETENVRN DVTVASAMEE LQNYPWKRRK VDGGGEGGGG GQTRDFLGVG VQTLCHPSSI NGWI
101: VRKRVYVCPE KTCVHHDPAR ALGDLTGIKK HFCRKHGEKK WTCEKCAKRY AVHSDYKAHS KTCGTREYRC DCGTIFSRRD SFITHRAFCD ALAEETAKIN
201: AASHLNGLSA AGTVGMNLNY QYLMGTLNPP LQPFEPQPPT NQNHHHHFLP PPPSSSSSLS LWMGQDIAPT SQTQPQDYEW VFANAKAASG CINNNNHNDL
301: ITQTANASST TTATLSVPSL FSSDQTQSLN ANVNMSATAL LQKAAEIGAN STTATTTNPS AFLKSFPQKS SDQTTTGYDG GEKFFALFGT NNNIGVVSNS
401: HDQETENVRN DVTVASAMEE LQNYPWKRRK VDGGGEGGGG GQTRDFLGVG VQTLCHPSSI NGWI
001: MTSEVLQTIS SGSGFAQPQS SSTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPTTL MATNRFLCEV CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK
101: EVRKRVYVCP EKTCVHHHSS RALGDLTGIK KHFCRKHGEK KWTCEKCAKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETAKI
201: NAVSHLNGLA AAGAPGSVNL NYQYLMGTFI PPLQPFVPQP QTNPNHHHQH FQPPTSSSLS LWMGQDIAPP QPQPDYDWVF GNAKAASACI DNNNTHDEQI
301: TQNANASLTT TTTLSAPSLF SSDQPQNANA NSNVNMSATA LLQKAAEIGA TSTTTAATND PSTFLQSFPL KSTDQTTSYD SGEKFFALFG SNNNIGLMSR
401: SHDHQEIENA RNDVTVASAL DELQNYPWKR RRVDGGGEVG GGGQTRDFLG VGVQTLCHPS SINGWI
101: EVRKRVYVCP EKTCVHHHSS RALGDLTGIK KHFCRKHGEK KWTCEKCAKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETAKI
201: NAVSHLNGLA AAGAPGSVNL NYQYLMGTFI PPLQPFVPQP QTNPNHHHQH FQPPTSSSLS LWMGQDIAPP QPQPDYDWVF GNAKAASACI DNNNTHDEQI
301: TQNANASLTT TTTLSAPSLF SSDQPQNANA NSNVNMSATA LLQKAAEIGA TSTTTAATND PSTFLQSFPL KSTDQTTSYD SGEKFFALFG SNNNIGLMSR
401: SHDHQEIENA RNDVTVASAL DELQNYPWKR RRVDGGGEVG GGGQTRDFLG VGVQTLCHPS SINGWI
Arabidopsis Description
NUCZinc finger protein NUTCRACKER [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.