Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57128 | Canola | nucleus | 94.27 | 93.7 |
| Bra037151.1-P | Field mustard | nucleus | 93.86 | 93.29 |
| CDY09390 | Canola | nucleus | 19.84 | 81.51 |
| CDY04118 | Canola | nucleus | 19.84 | 81.51 |
| AT5G66730.1 | Thale cress | nucleus | 81.8 | 80.0 |
| CDY67009 | Canola | nucleus | 76.07 | 78.15 |
| CDY14910 | Canola | nucleus | 20.25 | 74.44 |
| CDY24490 | Canola | nucleus | 63.8 | 71.72 |
| CDX77936 | Canola | nucleus | 63.39 | 71.1 |
| CDY37489 | Canola | nucleus | 26.18 | 69.57 |
| CDY72283 | Canola | nucleus | 26.18 | 67.72 |
| CDY53540 | Canola | nucleus | 24.34 | 61.34 |
| CDY04117 | Canola | nucleus | 25.77 | 58.88 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 60.12 | 58.1 |
| CDY70142 | Canola | nucleus | 20.65 | 55.49 |
| KRH76829 | Soybean | nucleus | 58.08 | 54.93 |
| KRH08298 | Soybean | nucleus | 53.99 | 51.66 |
| KRH69942 | Soybean | nucleus | 53.58 | 49.9 |
| KRH69941 | Soybean | nucleus, plastid | 53.58 | 49.9 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 52.56 | 48.95 |
| GSMUA_Achr4P14030_001 | Banana | nucleus | 48.47 | 43.65 |
| CDX97281 | Canola | nucleus, plastid | 34.15 | 43.38 |
| TraesCS4A01G041400.1 | Wheat | nucleus | 42.54 | 42.71 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 46.01 | 42.61 |
| TraesCS4D01G262500.1 | Wheat | nucleus | 45.4 | 42.21 |
| CDX96046 | Canola | nucleus | 20.04 | 42.06 |
| HORVU4Hr1G070950.8 | Barley | nucleus | 46.01 | 41.98 |
| CDX91304 | Canola | nucleus, plastid | 34.56 | 41.83 |
| EER95332 | Sorghum | nucleus | 44.79 | 41.71 |
| GSMUA_Achr3P29940_001 | Banana | nucleus | 49.08 | 41.31 |
| Zm00001d028139_P001 | Maize | nucleus | 45.4 | 41.19 |
| Os03t0197800-00 | Rice | nucleus | 45.6 | 40.4 |
| GSMUA_Achr4P07200_001 | Banana | nucleus | 44.38 | 40.19 |
| Solyc02g062940.2.1 | Tomato | nucleus | 53.17 | 39.63 |
| GSMUA_Achr7P25960_001 | Banana | nucleus | 47.85 | 39.53 |
| CDX86010 | Canola | nucleus | 36.2 | 39.51 |
| CDX75732 | Canola | nucleus | 35.58 | 39.28 |
| CDY22307 | Canola | nucleus | 36.81 | 38.79 |
| CDY53836 | Canola | nucleus | 35.79 | 38.63 |
| CDX94759 | Canola | nucleus | 36.61 | 38.58 |
| CDY32514 | Canola | nucleus | 38.45 | 38.37 |
| CDY18188 | Canola | nucleus | 37.42 | 38.2 |
| CDY59418 | Canola | nucleus | 32.11 | 38.01 |
| CDX89862 | Canola | nucleus | 37.22 | 37.92 |
| CDX82515 | Canola | nucleus | 34.15 | 37.87 |
| CDX97521 | Canola | nucleus | 37.42 | 37.73 |
| CDY51742 | Canola | nucleus | 37.22 | 37.6 |
| CDY55238 | Canola | nucleus | 36.61 | 36.83 |
| CDY45271 | Canola | nucleus | 30.88 | 36.3 |
| CDY11241 | Canola | nucleus | 37.01 | 35.98 |
| CDX80854 | Canola | nucleus | 36.81 | 35.64 |
| CDY10404 | Canola | nucleus | 36.81 | 35.5 |
| CDY45270 | Canola | nucleus | 32.52 | 35.33 |
| CDY44344 | Canola | nucleus | 35.79 | 35.0 |
| PGSC0003DMT400040064 | Potato | nucleus | 52.56 | 34.92 |
| CDY17615 | Canola | nucleus | 37.63 | 34.91 |
| CDY03081 | Canola | nucleus | 37.22 | 34.73 |
| CDX81653 | Canola | nucleus | 33.13 | 34.69 |
| CDX70328 | Canola | nucleus | 35.99 | 34.24 |
| CDY17440 | Canola | nucleus | 33.33 | 34.1 |
| CDY15814 | Canola | nucleus | 32.52 | 33.62 |
| CDY17614 | Canola | nucleus, plastid | 34.97 | 33.33 |
| CDY15811 | Canola | nucleus | 38.65 | 33.27 |
| CDY09391 | Canola | nucleus | 38.24 | 32.98 |
| CDY03080 | Canola | nucleus, plastid | 34.76 | 32.95 |
| CDX84974 | Canola | nucleus | 22.9 | 29.24 |
| CDY60366 | Canola | nucleus | 22.7 | 28.98 |
| CDY70938 | Canola | cytosol, nucleus | 16.16 | 28.94 |
| CDY51986 | Canola | nucleus | 22.29 | 28.84 |
| CDY36123 | Canola | nucleus | 22.29 | 28.84 |
| CDY04204 | Canola | nucleus | 20.86 | 28.41 |
| CDY67587 | Canola | cytosol, nucleus | 12.68 | 27.56 |
| CDY04203 | Canola | plastid | 21.68 | 27.53 |
| CDY12268 | Canola | nucleus | 24.95 | 27.35 |
| CDY17620 | Canola | nucleus | 24.54 | 27.03 |
| CDY60095 | Canola | nucleus | 24.34 | 26.92 |
| CDY04102 | Canola | nucleus | 24.54 | 26.73 |
| CDY07400 | Canola | nucleus | 22.29 | 26.39 |
| CDY63960 | Canola | nucleus | 24.34 | 26.39 |
| CDY09400 | Canola | nucleus | 23.52 | 26.26 |
| CDY15800 | Canola | nucleus | 23.52 | 26.02 |
| CDY68983 | Canola | nucleus | 20.65 | 25.83 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078CX82 | EnsemblPlants:CDX81372 | ProteinID:CDX81372 | ProteinID:CDX81372.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00134933001 | InterPro:IPR013087 | PFAM:PF00096 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF20 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0004EE96F7 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
BnaC09g07830D
Coordinates
chrLK031824:+:1296565..1298515
Molecular Weight (calculated)
51670.7 Da
IEP (calculated)
7.464
GRAVY (calculated)
-0.471
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVDLDDSST VSGDASVSST GNQNPPPQSA VKKKRNLPGM PDPDSEVIAL SPKTLMATNR FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKYKCE KCSKSYAVQS DWKAHSKICG SKEYRCDCGT LFSRRDSFIT HRAFCDVLAE ESAKNHTQSK
201: KLYPETVSES QQKSPAAVDS PPPSPSPPPV SVSVSVESET EPEPANIASS LVLPIQDSSD EPENNTLEVI MEEAPRTIGL NGSDDHSNNN KSVYAALFAS
301: SSSSPSLYAA SSTPSPSLFP PSSSMEPISL CLSTTGPSLF GATIQDPPPP HFLTPLLPPP PQPAISATAL LQKAAQMGST GSGGSLLRGL GIVSTTSSPM
401: ELSSHEAGFG LGLGLPCSSG SGLKELMMGN SSVFDPKQTT LDFLGLGRAV GNNNPGGGGL SSALWGGGGG MDVFGSGELS DKDTGRRSS
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKYKCE KCSKSYAVQS DWKAHSKICG SKEYRCDCGT LFSRRDSFIT HRAFCDVLAE ESAKNHTQSK
201: KLYPETVSES QQKSPAAVDS PPPSPSPPPV SVSVSVESET EPEPANIASS LVLPIQDSSD EPENNTLEVI MEEAPRTIGL NGSDDHSNNN KSVYAALFAS
301: SSSSPSLYAA SSTPSPSLFP PSSSMEPISL CLSTTGPSLF GATIQDPPPP HFLTPLLPPP PQPAISATAL LQKAAQMGST GSGGSLLRGL GIVSTTSSPM
401: ELSSHEAGFG LGLGLPCSSG SGLKELMMGN SSVFDPKQTT LDFLGLGRAV GNNNPGGGGL SSALWGGGGG MDVFGSGELS DKDTGRRSS
001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
Arabidopsis Description
IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.