Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37489 | Canola | nucleus | 38.02 | 100.0 |
| Bra021510.1-P | Field mustard | nucleus | 99.79 | 94.71 |
| CDX97521 | Canola | nucleus | 87.19 | 87.01 |
| CDY55238 | Canola | nucleus | 86.78 | 86.42 |
| CDX82515 | Canola | nucleus | 77.48 | 85.03 |
| CDY04118 | Canola | nucleus | 20.87 | 84.87 |
| CDY09390 | Canola | nucleus | 20.45 | 83.19 |
| CDX75732 | Canola | nucleus | 75.41 | 82.39 |
| AT3G13810.2 | Thale cress | nucleus | 83.47 | 78.6 |
| CDY70142 | Canola | nucleus | 29.55 | 78.57 |
| CDY14910 | Canola | nucleus | 20.25 | 73.68 |
| CDY72283 | Canola | nucleus | 27.48 | 70.37 |
| CDY53540 | Canola | nucleus | 25.83 | 64.43 |
| CDY04117 | Canola | nucleus | 27.27 | 61.68 |
| CDY70938 | Canola | cytosol, nucleus | 31.61 | 56.04 |
| CDX97281 | Canola | nucleus, plastid | 35.74 | 44.94 |
| CDX96046 | Canola | nucleus | 21.28 | 44.21 |
| CDX91304 | Canola | nucleus, plastid | 36.16 | 43.32 |
| CDY24490 | Canola | nucleus | 37.19 | 41.38 |
| CDX77936 | Canola | nucleus | 37.19 | 41.28 |
| CDX89862 | Canola | nucleus | 39.26 | 39.58 |
| CDX94759 | Canola | nucleus | 37.81 | 39.44 |
| CDY18188 | Canola | nucleus | 38.84 | 39.25 |
| CDY22307 | Canola | nucleus | 37.4 | 39.01 |
| CDY32514 | Canola | nucleus | 39.46 | 38.98 |
| CDY67009 | Canola | nucleus | 38.02 | 38.66 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 41.74 | 37.97 |
| CDY17615 | Canola | nucleus | 41.12 | 37.76 |
| CDX86010 | Canola | nucleus | 34.92 | 37.72 |
| CDY59418 | Canola | nucleus | 32.02 | 37.53 |
| CDY03081 | Canola | nucleus | 40.5 | 37.4 |
| CDY11241 | Canola | nucleus | 38.84 | 37.38 |
| CDX80854 | Canola | nucleus | 38.84 | 37.23 |
| CDX81372 | Canola | nucleus | 37.6 | 37.22 |
| CDY53836 | Canola | nucleus | 34.5 | 36.87 |
| CDY57128 | Canola | nucleus | 37.4 | 36.79 |
| CDY10404 | Canola | nucleus | 38.43 | 36.69 |
| CDY44344 | Canola | nucleus | 37.81 | 36.6 |
| CDX70328 | Canola | nucleus | 37.81 | 35.6 |
| CDY45271 | Canola | nucleus | 30.58 | 35.58 |
| CDY17440 | Canola | nucleus | 34.92 | 35.36 |
| CDY09391 | Canola | nucleus | 40.5 | 34.57 |
| CDX81653 | Canola | nucleus | 33.26 | 34.48 |
| CDY15814 | Canola | nucleus | 33.47 | 34.25 |
| CDY15811 | Canola | nucleus | 40.08 | 34.15 |
| CDY17614 | Canola | nucleus, plastid | 36.16 | 34.11 |
| CDY03080 | Canola | nucleus, plastid | 36.16 | 33.91 |
| CDY45270 | Canola | nucleus | 30.99 | 33.33 |
| CDY04204 | Canola | nucleus | 21.9 | 29.53 |
| CDX84974 | Canola | nucleus | 22.93 | 28.98 |
| CDY60366 | Canola | nucleus | 22.73 | 28.72 |
| CDY04203 | Canola | plastid | 22.73 | 28.57 |
| CDY36123 | Canola | nucleus | 21.9 | 28.04 |
| CDY51986 | Canola | nucleus | 21.9 | 28.04 |
| CDY67587 | Canola | cytosol, nucleus | 13.02 | 28.0 |
| CDY07400 | Canola | nucleus | 23.35 | 27.36 |
| CDY09400 | Canola | nucleus | 23.97 | 26.48 |
| CDY17620 | Canola | nucleus | 23.97 | 26.13 |
| CDY15800 | Canola | nucleus | 23.55 | 25.79 |
| CDY60095 | Canola | nucleus | 23.35 | 25.57 |
| CDY04102 | Canola | nucleus | 23.55 | 25.39 |
| CDY63960 | Canola | nucleus | 23.35 | 25.06 |
| CDY12268 | Canola | nucleus | 22.93 | 24.89 |
| CDY68983 | Canola | nucleus | 18.59 | 23.02 |
Protein Annotations
| EnsemblPlants:CDY51742 | EnsemblPlantsGene:GSBRNA2T00004106001 | Gene3D:3.30.160.60 | GO:A0A078IP86 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 |
| PFscan:PS50157 | ProteinID:CDY51742 | ProteinID:CDY51742.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EEABB3 | UniProt:A0A078IP86 | MapMan:15.5.15 | : | : |
Description
BnaA01g37250DBnaA01g37250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP86]
Coordinates
chrLK033023:+:73734..76857
Molecular Weight (calculated)
53335.9 Da
IEP (calculated)
7.905
GRAVY (calculated)
-0.846
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNEDILLHQ QVQQQEENMS NLTSASGDQA SVSSGNRTEV SGSNYFPHHQ QQEEQQQFSV PESQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI
101: CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDCKA HSKTCGTKEY
201: RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPQNQNH QPNPLMIQQS SSSSHHQARP TLNISSSSSS SHNITNSLYQ QQSNDQIINY HHHSIPPWLA
301: PQPQDLTSSN PNPSNGGGGG LFSLAASPAM SATALLQKAA QMGSTKTPPL PPTTVSERSA HHNNLTTTMA AMMTSPSGFI SSNNNNNNQV LFQDYNASEF
401: DHNGGEEAFD DTFGGFLRTN VDTTTTSGSD KNKSGGGGGE EGLTRDFLGL RPLISHNEIL SFAGLGNCIS GSASDQLHPK PWQG
101: CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDCKA HSKTCGTKEY
201: RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPQNQNH QPNPLMIQQS SSSSHHQARP TLNISSSSSS SHNITNSLYQ QQSNDQIINY HHHSIPPWLA
301: PQPQDLTSSN PNPSNGGGGG LFSLAASPAM SATALLQKAA QMGSTKTPPL PPTTVSERSA HHNNLTTTMA AMMTSPSGFI SSNNNNNNQV LFQDYNASEF
401: DHNGGEEAFD DTFGGFLRTN VDTTTTSGSD KNKSGGGGGE EGLTRDFLGL RPLISHNEIL SFAGLGNCIS GSASDQLHPK PWQG
001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
Arabidopsis Description
AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.