Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11241 | Canola | nucleus | 97.43 | 97.81 |
| AT5G03150.1 | Thale cress | nucleus | 89.11 | 89.46 |
| CDY10404 | Canola | nucleus | 87.92 | 87.57 |
| CDX70328 | Canola | nucleus | 89.11 | 87.55 |
| CDY44344 | Canola | nucleus | 86.53 | 87.4 |
| CDY09390 | Canola | nucleus | 19.41 | 82.35 |
| CDY04118 | Canola | nucleus | 19.41 | 82.35 |
| CDY14910 | Canola | nucleus | 18.42 | 69.92 |
| CDY37489 | Canola | nucleus | 25.35 | 69.57 |
| CDY72283 | Canola | nucleus | 24.75 | 66.14 |
| CDY53540 | Canola | nucleus | 24.36 | 63.4 |
| CDY04117 | Canola | nucleus | 25.94 | 61.22 |
| CDY70142 | Canola | nucleus | 20.4 | 56.59 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 52.67 | 54.06 |
| KRH67672 | Soybean | nucleus | 52.08 | 51.17 |
| KRG95964 | Soybean | nucleus | 51.09 | 50.59 |
| PGSC0003DMT400004390 | Potato | nucleus | 42.77 | 47.37 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 42.57 | 46.84 |
| CDX97281 | Canola | nucleus, plastid | 32.67 | 42.86 |
| CDX96046 | Canola | nucleus | 19.6 | 42.49 |
| CDX75732 | Canola | nucleus | 36.24 | 41.31 |
| CDX77936 | Canola | nucleus | 35.64 | 41.28 |
| CDY24490 | Canola | nucleus | 35.45 | 41.15 |
| CDX91304 | Canola | nucleus, plastid | 32.87 | 41.09 |
| CDY59418 | Canola | nucleus | 33.27 | 40.68 |
| GSMUA_Achr7P22720_001 | Banana | mitochondrion | 22.57 | 40.57 |
| CDX82515 | Canola | nucleus | 35.25 | 40.36 |
| CDX89862 | Canola | nucleus | 37.82 | 39.79 |
| CDY18188 | Canola | nucleus | 37.62 | 39.67 |
| CDX97521 | Canola | nucleus | 37.62 | 39.18 |
| CDX86010 | Canola | nucleus | 34.65 | 39.06 |
| CDY55238 | Canola | nucleus | 37.43 | 38.89 |
| CDY67009 | Canola | nucleus | 36.63 | 38.87 |
| CDY53836 | Canola | nucleus | 34.85 | 38.85 |
| CDY51742 | Canola | nucleus | 37.23 | 38.84 |
| PGSC0003DMT400027159 | Potato | nucleus | 37.62 | 38.62 |
| CDY22307 | Canola | nucleus | 35.45 | 38.58 |
| CDX94759 | Canola | nucleus | 35.45 | 38.58 |
| Solyc10g084180.1.1 | Tomato | nucleus | 37.62 | 38.54 |
| CDY32514 | Canola | nucleus | 37.23 | 38.37 |
| CDY17440 | Canola | nucleus | 35.45 | 37.45 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 39.01 | 37.31 |
| CDX81653 | Canola | nucleus | 34.26 | 37.05 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 38.61 | 36.93 |
| CDX81372 | Canola | nucleus | 35.64 | 36.81 |
| CDY57128 | Canola | nucleus | 35.45 | 36.38 |
| CDY17614 | Canola | nucleus, plastid | 36.83 | 36.26 |
| CDY17615 | Canola | nucleus | 37.82 | 36.24 |
| CDY15814 | Canola | nucleus | 33.86 | 36.15 |
| CDY03081 | Canola | nucleus | 37.23 | 35.88 |
| CDY03080 | Canola | nucleus, plastid | 36.24 | 35.47 |
| CDY45271 | Canola | nucleus | 29.11 | 35.34 |
| CDY09391 | Canola | nucleus | 38.61 | 34.39 |
| CDY15811 | Canola | nucleus | 38.42 | 34.15 |
| CDY45270 | Canola | nucleus | 29.7 | 33.33 |
| CDY70938 | Canola | cytosol, nucleus | 17.03 | 31.5 |
| CDY36123 | Canola | nucleus | 21.98 | 29.37 |
| CDY51986 | Canola | nucleus | 21.98 | 29.37 |
| CDX84974 | Canola | nucleus | 21.58 | 28.46 |
| CDY60366 | Canola | nucleus | 21.39 | 28.2 |
| CDY04204 | Canola | nucleus | 19.8 | 27.86 |
| CDY04203 | Canola | plastid | 20.59 | 27.01 |
| CDY09400 | Canola | nucleus | 23.17 | 26.71 |
| CDY67587 | Canola | cytosol, nucleus | 11.68 | 26.22 |
| CDY07400 | Canola | nucleus | 21.19 | 25.91 |
| CDY15800 | Canola | nucleus | 22.57 | 25.79 |
| CDY12268 | Canola | nucleus | 22.77 | 25.78 |
| CDY17620 | Canola | nucleus | 22.57 | 25.68 |
| CDY60095 | Canola | nucleus | 22.38 | 25.57 |
| CDY04102 | Canola | nucleus | 22.38 | 25.17 |
| CDY63960 | Canola | nucleus | 22.38 | 25.06 |
| CDY68983 | Canola | nucleus | 18.81 | 24.3 |
Protein Annotations
| EnsemblPlants:CDX80854 | EnsemblPlantsGene:GSBRNA2T00134249001 | Gene3D:3.30.160.60 | GO:A0A078CXU3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:JKD-like | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF42 | PFscan:PS50157 | ProteinID:CDX80854 | ProteinID:CDX80854.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEB04E | MapMan:15.5.15 | : | : |
Description
BnaC03g01080D
Coordinates
chrLK031823:+:495232..497822
Molecular Weight (calculated)
55484.1 Da
IEP (calculated)
9.779
GRAVY (calculated)
-0.695
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMIPGDPFS ILSSMGGFVH QEQHIHHLQQ HIPELNPNSN PNPSAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNPAISTTT SLNFANDSHV INNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHT QGSSEMVQMA STGNHHLFPL
301: SSSSFLSDFS DHHYNQQFEI PTTSTNPNLT LSSSSTSQQT SASLPSLHQQ HQTLKGSSFS PLFSSSSDKK QNKHLSPMSA TALLQKAAQM GSTRSNSTTV
401: PPLFAGPTMT SSSSAASPPP RSSSPMMIEQ QLNNFNHNLA PPTSGVTTSS VDNNNPFQSN WSGLNPAQQM GLTRDFLGVS NENHPHQTGR HPFLPQELAR
501: FAPLG
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNPAISTTT SLNFANDSHV INNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHT QGSSEMVQMA STGNHHLFPL
301: SSSSFLSDFS DHHYNQQFEI PTTSTNPNLT LSSSSTSQQT SASLPSLHQQ HQTLKGSSFS PLFSSSSDKK QNKHLSPMSA TALLQKAAQM GSTRSNSTTV
401: PPLFAGPTMT SSSSAASPPP RSSSPMMIEQ QLNNFNHNLA PPTSGVTTSS VDNNNPFQSN WSGLNPAQQM GLTRDFLGVS NENHPHQTGR HPFLPQELAR
501: FAPLG
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
Arabidopsis Description
JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.