Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04102 | Canola | nucleus | 97.56 | 98.0 |
| AT2G01940.3 | Thale cress | nucleus | 88.25 | 89.24 |
| CDY09400 | Canola | nucleus | 86.03 | 88.58 |
| CDY15800 | Canola | nucleus | 86.47 | 88.24 |
| CDY17620 | Canola | nucleus | 85.81 | 87.16 |
| CDY60095 | Canola | nucleus | 85.14 | 86.88 |
| CDX96046 | Canola | nucleus | 37.03 | 71.67 |
| CDY09390 | Canola | nucleus | 16.63 | 63.03 |
| CDY04118 | Canola | nucleus | 16.63 | 63.03 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 59.2 | 62.82 |
| CDY14910 | Canola | nucleus | 17.52 | 59.4 |
| CDY60366 | Canola | nucleus | 50.33 | 59.27 |
| CDX84974 | Canola | nucleus | 50.33 | 59.27 |
| KRH58582 | Soybean | nucleus | 56.98 | 58.41 |
| CDY04203 | Canola | plastid | 49.45 | 57.92 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 48.34 | 57.67 |
| CDY04204 | Canola | nucleus | 45.9 | 57.66 |
| KRH42485 | Soybean | nucleus | 57.43 | 57.3 |
| CDY36123 | Canola | nucleus | 47.45 | 56.61 |
| CDY51986 | Canola | nucleus | 47.23 | 56.35 |
| CDY07400 | Canola | nucleus | 51.44 | 56.17 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 44.79 | 54.59 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 45.45 | 53.95 |
| GSMUA_Achr10P... | Banana | nucleus | 45.01 | 53.0 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 48.56 | 51.65 |
| CDY72283 | Canola | nucleus | 21.51 | 51.32 |
| CDY37489 | Canola | nucleus | 20.62 | 50.54 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.24 | 48.56 |
| Solyc05g054030.2.1 | Tomato | nucleus | 40.58 | 48.03 |
| GSMUA_Achr10P... | Banana | nucleus | 41.91 | 47.37 |
| CDY53540 | Canola | nucleus | 20.18 | 46.91 |
| Zm00001d005871_P002 | Maize | nucleus | 45.23 | 46.26 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 40.58 | 45.19 |
| CDY04117 | Canola | nucleus | 21.29 | 44.86 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 41.02 | 44.69 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 41.02 | 44.58 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 48.12 | 44.11 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 47.89 | 43.99 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 47.89 | 43.99 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 40.8 | 43.29 |
| Os03t0237250-01 | Rice | plastid | 41.91 | 43.15 |
| Zm00001d020683_P001 | Maize | nucleus | 47.01 | 42.66 |
| EER96827 | Sorghum | nucleus | 46.78 | 42.28 |
| Zm00001d031759_P001 | Maize | nucleus | 48.12 | 41.89 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 41.24 | 41.52 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 41.46 | 41.37 |
| CDY70142 | Canola | nucleus | 16.63 | 41.21 |
| Os08t0467100-01 | Rice | nucleus | 48.12 | 40.71 |
| KXG39813 | Sorghum | nucleus, plastid | 41.24 | 40.52 |
| EES13982 | Sorghum | nucleus | 47.89 | 40.3 |
| CDX97281 | Canola | nucleus, plastid | 25.06 | 29.35 |
| CDY24490 | Canola | nucleus | 27.49 | 28.51 |
| CDX91304 | Canola | nucleus, plastid | 25.28 | 28.22 |
| CDX77936 | Canola | nucleus | 27.05 | 27.98 |
| CDX86010 | Canola | nucleus | 26.16 | 26.34 |
| CDY53836 | Canola | nucleus | 25.94 | 25.83 |
| CDY22307 | Canola | nucleus | 26.16 | 25.43 |
| CDX94759 | Canola | nucleus | 26.16 | 25.43 |
| CDY67009 | Canola | nucleus | 26.83 | 25.42 |
| CDX75732 | Canola | nucleus | 24.83 | 25.28 |
| CDY59418 | Canola | nucleus | 23.06 | 25.18 |
| CDX89862 | Canola | nucleus | 26.16 | 24.58 |
| CDX82515 | Canola | nucleus | 23.95 | 24.49 |
| CDY18188 | Canola | nucleus | 25.94 | 24.43 |
| CDX81372 | Canola | nucleus | 26.39 | 24.34 |
| CDY45271 | Canola | nucleus | 22.39 | 24.28 |
| CDY57128 | Canola | nucleus | 26.39 | 24.19 |
| CDY45270 | Canola | nucleus | 23.73 | 23.78 |
| CDY55238 | Canola | nucleus | 25.28 | 23.46 |
| CDY51742 | Canola | nucleus | 25.06 | 23.35 |
| CDX97521 | Canola | nucleus | 25.06 | 23.3 |
| CDY32514 | Canola | nucleus | 25.28 | 23.27 |
| CDY15814 | Canola | nucleus | 24.39 | 23.26 |
| CDX81653 | Canola | nucleus | 23.73 | 22.91 |
| CDY17440 | Canola | nucleus | 24.17 | 22.8 |
| CDY44344 | Canola | nucleus | 25.28 | 22.8 |
| CDX80854 | Canola | nucleus | 25.06 | 22.38 |
| CDY10404 | Canola | nucleus | 25.06 | 22.29 |
| CDY11241 | Canola | nucleus | 24.83 | 22.27 |
| CDY17614 | Canola | nucleus, plastid | 25.28 | 22.22 |
| CDY03080 | Canola | nucleus, plastid | 25.28 | 22.09 |
| CDY03081 | Canola | nucleus | 25.5 | 21.95 |
| CDY17615 | Canola | nucleus | 25.5 | 21.82 |
| CDX70328 | Canola | nucleus | 24.83 | 21.79 |
| CDY09391 | Canola | nucleus | 26.16 | 20.81 |
| CDY15811 | Canola | nucleus | 26.16 | 20.77 |
| CDY12268 | Canola | nucleus | 17.96 | 18.16 |
| CDY68983 | Canola | nucleus | 14.63 | 16.88 |
| CDY70938 | Canola | cytosol, nucleus | 9.31 | 15.38 |
| CDY67587 | Canola | cytosol, nucleus | 6.43 | 12.89 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078JCY5 | UniProt:A0A078JCY5 | EnsemblPlants:CDY63960 | ProteinID:CDY63960 |
| ProteinID:CDY63960.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | EnsemblPlantsGene:GSBRNA2T00040747001 | InterPro:IPR013087 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF6 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0004EDDA2C | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
BnaC09g52310DBnaC09g52310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCY5]
Coordinates
chrLK034377:+:14127..16678
Molecular Weight (calculated)
50415.6 Da
IEP (calculated)
8.870
GRAVY (calculated)
-0.759
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTDQGAVVM LDDDASNKNT SNPCCVVSSS SSDPFLTSSE NGVTTTNTST KKRKRRPAGT PDPDAEVVSL SPRTLLESDR YICEICNQGF QRDQNLQMHR
101: RRHKVPWKLL KRDNNIEVKK RVYVCPEPTC LHHSPCHALG DLVGIKKHFR RKHSNHKQWV CERCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF
201: IEHQDNCSVR KVNRKPPPPQ TAVAVPACSS ITASTASTPS SEGNNCGAVA VATPIPLEGR PIHLRNSCFT PSILTNSSSL NLELQLLPLT SNQNPNQENH
301: QHKVNEPSHH HHHHDTTNLN LSIAPSSSSY HRPYNNFDRI KEIMASEQMM KIAMKEKAYA EEAKREAKRQ REMAENEFMN AKKIRQQAQA ELERAKLLKE
401: QSMKKISSTI MQVTCQTCKG QFQAVAVPAA ADETSLVVSY MSSANTDGEE S
101: RRHKVPWKLL KRDNNIEVKK RVYVCPEPTC LHHSPCHALG DLVGIKKHFR RKHSNHKQWV CERCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF
201: IEHQDNCSVR KVNRKPPPPQ TAVAVPACSS ITASTASTPS SEGNNCGAVA VATPIPLEGR PIHLRNSCFT PSILTNSSSL NLELQLLPLT SNQNPNQENH
301: QHKVNEPSHH HHHHDTTNLN LSIAPSSSSY HRPYNNFDRI KEIMASEQMM KIAMKEKAYA EEAKREAKRQ REMAENEFMN AKKIRQQAQA ELERAKLLKE
401: QSMKKISSTI MQVTCQTCKG QFQAVAVPAA ADETSLVVSY MSSANTDGEE S
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.