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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G240600.1 Wheat nucleus 97.76 97.76
TraesCS5B01G232200.1 Wheat nucleus 96.74 96.54
Zm00001d005871_P002 Maize nucleus 65.78 73.24
EER96827 Sorghum nucleus 71.69 70.54
Zm00001d020683_P001 Maize nucleus 70.88 70.02
Os08t0467100-01 Rice nucleus 70.06 64.54
Zm00001d031759_P001 Maize nucleus 67.82 64.29
GSMUA_Achr7P18610_001 Banana nucleus 49.29 64.02
CDX96046 Canola nucleus 30.14 63.52
EES13982 Sorghum nucleus 68.02 62.31
GSMUA_Achr5P23130_001 Banana nucleus 46.64 60.26
GSMUA_Achr6P02490_001 Banana nucleus 44.4 58.92
GSMUA_Achr3P20220_001 Banana nucleus 50.71 58.73
Solyc01g005060.2.1 Tomato nucleus 40.12 58.11
GSMUA_Achr10P... Banana nucleus 43.99 56.4
KRH60588 Soybean nucleus 45.82 56.25
VIT_01s0011g06400.t01 Wine grape nucleus 48.27 55.76
PGSC0003DMT400079735 Potato nucleus, plastid 49.49 55.61
Solyc06g072360.2.1 Tomato nucleus 44.2 55.36
KRH41885 Soybean nucleus 42.77 55.26
AT1G25250.3 Thale cress nucleus 42.16 53.77
PGSC0003DMT400069306 Potato nucleus 44.81 53.53
GSMUA_Achr2P21680_001 Banana nucleus, plastid 41.75 53.52
CDY04204 Canola nucleus 39.1 53.48
VIT_17s0000g01870.t01 Wine grape nucleus 49.08 52.97
CDY36123 Canola nucleus 40.73 52.91
Bra010981.1-P Field mustard nucleus 40.73 52.91
CDY60366 Canola nucleus 41.14 52.74
CDX84974 Canola nucleus 41.14 52.74
CDY51986 Canola nucleus 40.53 52.65
Bra024771.1-P Field mustard nucleus 40.94 52.48
Solyc03g098070.2.1 Tomato nucleus 38.9 52.47
KRH38986 Soybean nucleus 49.69 51.48
KRH48724 Soybean nucleus 50.31 51.14
KRH58582 Soybean nucleus 45.42 50.68
CDY04203 Canola plastid 39.51 50.39
GSMUA_Achr10P... Banana nucleus 40.73 50.13
CDY07400 Canola nucleus 42.16 50.12
Bra004050.1-P Field mustard nucleus 42.16 50.12
AT1G68130.1 Thale cress nucleus 42.77 50.12
Bra004283.1-P Field mustard nucleus 41.55 49.51
KRH42485 Soybean nucleus 45.42 49.34
Bra017432.1-P Field mustard nucleus 43.58 48.64
Bra026624.1-P Field mustard nucleus 43.38 48.63
TraesCS4A01G074700.1 Wheat nucleus, plastid 40.73 48.19
CDY09400 Canola nucleus 42.97 48.17
AT2G01940.3 Thale cress nucleus 43.58 47.98
CDY15800 Canola nucleus 43.18 47.96
CDY63960 Canola nucleus 43.99 47.89
Bra024841.1-P Field mustard nucleus 43.18 47.75
CDY17620 Canola nucleus 43.18 47.75
CDY04102 Canola nucleus 43.58 47.66
CDY60095 Canola nucleus 41.96 46.61
Solyc05g054030.2.1 Tomato nucleus 34.22 44.09
TraesCS6A01G126000.1 Wheat nucleus 23.22 27.27
TraesCS3A01G170700.1 Wheat nucleus 25.25 25.36
TraesCS4A01G041400.1 Wheat nucleus 24.44 24.64
TraesCS3A01G205800.1 Wheat nucleus 23.63 24.32
TraesCS3A01G105100.1 Wheat nucleus 23.83 23.59
TraesCS2A01G289500.1 Wheat nucleus 22.81 23.19
TraesCS4A01G008900.1 Wheat nucleus 22.4 22.68
TraesCS5A01G356100.1 Wheat nucleus, plastid 25.05 22.57
TraesCS6A01G254500.1 Wheat nucleus 24.24 20.59
TraesCS2A01G403200.2 Wheat nucleus 25.25 18.7
TraesCS2A01G188400.2 Wheat nucleus 25.25 14.94
Protein Annotations
EnsemblPlants:TraesCS5A01G233700.1EnsemblPlantsGene:TraesCS5A01G233700Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typencoils:CoilPANTHER:PTHR10593PANTHER:PTHR10593:SF54
PFscan:PS50157ScanProsite:PS00028SEG:segSMART:SM00355SUPFAM:SSF57667MapMan:15.5.15
Description
No Description!
Coordinates
chr5A:+:449254967..449257715
Molecular Weight (calculated)
52776.3 Da
IEP (calculated)
8.682
GRAVY (calculated)
-0.568
Length
491 amino acids
Sequence
(BLAST)
001: MLGSCAPMAG PPTDEETAEP PFGSSLQIAT GSPATKRKRR PAGTPDPDAE VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE
101: AARKRVFVCP EPSCLHHDPS HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CTAGCPQAGA
201: GVAAPACGVA AAPSSQQQAP PPAISLSRSR TASSTSPSSD VVISAVTWPG AAAMRSPNPA AFHRFEQQVP SPRTPQPDGR GGGGHNLELQ LMPPSSGSTV
301: GAAAPLGVAP SWYAAPQSPP APISQGDNAA MQLQLSIGFC SGDNRGRRDV GEPSGGTAAR TMQEAREELR QAMAEKAAAD EARAQAKRQG ELAEQELASA
401: KRMRHQAQVE LSRAHALREH AVRQVNATLL QITCFSCRQK FRAVRPSAAM SSEVACSYVT EGGDVEVDNV DEPLILDGMR RRQQHATMDT M
Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.