Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G240600.1 | Wheat | nucleus | 97.76 | 97.76 |
TraesCS5B01G232200.1 | Wheat | nucleus | 96.74 | 96.54 |
Zm00001d005871_P002 | Maize | nucleus | 65.78 | 73.24 |
EER96827 | Sorghum | nucleus | 71.69 | 70.54 |
Zm00001d020683_P001 | Maize | nucleus | 70.88 | 70.02 |
Os08t0467100-01 | Rice | nucleus | 70.06 | 64.54 |
Zm00001d031759_P001 | Maize | nucleus | 67.82 | 64.29 |
GSMUA_Achr7P18610_001 | Banana | nucleus | 49.29 | 64.02 |
CDX96046 | Canola | nucleus | 30.14 | 63.52 |
EES13982 | Sorghum | nucleus | 68.02 | 62.31 |
GSMUA_Achr5P23130_001 | Banana | nucleus | 46.64 | 60.26 |
GSMUA_Achr6P02490_001 | Banana | nucleus | 44.4 | 58.92 |
GSMUA_Achr3P20220_001 | Banana | nucleus | 50.71 | 58.73 |
Solyc01g005060.2.1 | Tomato | nucleus | 40.12 | 58.11 |
GSMUA_Achr10P... | Banana | nucleus | 43.99 | 56.4 |
KRH60588 | Soybean | nucleus | 45.82 | 56.25 |
VIT_01s0011g06400.t01 | Wine grape | nucleus | 48.27 | 55.76 |
PGSC0003DMT400079735 | Potato | nucleus, plastid | 49.49 | 55.61 |
Solyc06g072360.2.1 | Tomato | nucleus | 44.2 | 55.36 |
KRH41885 | Soybean | nucleus | 42.77 | 55.26 |
AT1G25250.3 | Thale cress | nucleus | 42.16 | 53.77 |
PGSC0003DMT400069306 | Potato | nucleus | 44.81 | 53.53 |
GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.75 | 53.52 |
CDY04204 | Canola | nucleus | 39.1 | 53.48 |
VIT_17s0000g01870.t01 | Wine grape | nucleus | 49.08 | 52.97 |
CDY36123 | Canola | nucleus | 40.73 | 52.91 |
Bra010981.1-P | Field mustard | nucleus | 40.73 | 52.91 |
CDY60366 | Canola | nucleus | 41.14 | 52.74 |
CDX84974 | Canola | nucleus | 41.14 | 52.74 |
CDY51986 | Canola | nucleus | 40.53 | 52.65 |
Bra024771.1-P | Field mustard | nucleus | 40.94 | 52.48 |
Solyc03g098070.2.1 | Tomato | nucleus | 38.9 | 52.47 |
KRH38986 | Soybean | nucleus | 49.69 | 51.48 |
KRH48724 | Soybean | nucleus | 50.31 | 51.14 |
KRH58582 | Soybean | nucleus | 45.42 | 50.68 |
CDY04203 | Canola | plastid | 39.51 | 50.39 |
GSMUA_Achr10P... | Banana | nucleus | 40.73 | 50.13 |
CDY07400 | Canola | nucleus | 42.16 | 50.12 |
Bra004050.1-P | Field mustard | nucleus | 42.16 | 50.12 |
AT1G68130.1 | Thale cress | nucleus | 42.77 | 50.12 |
Bra004283.1-P | Field mustard | nucleus | 41.55 | 49.51 |
KRH42485 | Soybean | nucleus | 45.42 | 49.34 |
Bra017432.1-P | Field mustard | nucleus | 43.58 | 48.64 |
Bra026624.1-P | Field mustard | nucleus | 43.38 | 48.63 |
TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 40.73 | 48.19 |
CDY09400 | Canola | nucleus | 42.97 | 48.17 |
AT2G01940.3 | Thale cress | nucleus | 43.58 | 47.98 |
CDY15800 | Canola | nucleus | 43.18 | 47.96 |
CDY63960 | Canola | nucleus | 43.99 | 47.89 |
Bra024841.1-P | Field mustard | nucleus | 43.18 | 47.75 |
CDY17620 | Canola | nucleus | 43.18 | 47.75 |
CDY04102 | Canola | nucleus | 43.58 | 47.66 |
CDY60095 | Canola | nucleus | 41.96 | 46.61 |
Solyc05g054030.2.1 | Tomato | nucleus | 34.22 | 44.09 |
TraesCS6A01G126000.1 | Wheat | nucleus | 23.22 | 27.27 |
TraesCS3A01G170700.1 | Wheat | nucleus | 25.25 | 25.36 |
TraesCS4A01G041400.1 | Wheat | nucleus | 24.44 | 24.64 |
TraesCS3A01G205800.1 | Wheat | nucleus | 23.63 | 24.32 |
TraesCS3A01G105100.1 | Wheat | nucleus | 23.83 | 23.59 |
TraesCS2A01G289500.1 | Wheat | nucleus | 22.81 | 23.19 |
TraesCS4A01G008900.1 | Wheat | nucleus | 22.4 | 22.68 |
TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 25.05 | 22.57 |
TraesCS6A01G254500.1 | Wheat | nucleus | 24.24 | 20.59 |
TraesCS2A01G403200.2 | Wheat | nucleus | 25.25 | 18.7 |
TraesCS2A01G188400.2 | Wheat | nucleus | 25.25 | 14.94 |
Protein Annotations
EnsemblPlants:TraesCS5A01G233700.1 | EnsemblPlantsGene:TraesCS5A01G233700 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF54 |
PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5A:+:449254967..449257715
Molecular Weight (calculated)
52776.3 Da
IEP (calculated)
8.682
GRAVY (calculated)
-0.568
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGSCAPMAG PPTDEETAEP PFGSSLQIAT GSPATKRKRR PAGTPDPDAE VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE
101: AARKRVFVCP EPSCLHHDPS HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CTAGCPQAGA
201: GVAAPACGVA AAPSSQQQAP PPAISLSRSR TASSTSPSSD VVISAVTWPG AAAMRSPNPA AFHRFEQQVP SPRTPQPDGR GGGGHNLELQ LMPPSSGSTV
301: GAAAPLGVAP SWYAAPQSPP APISQGDNAA MQLQLSIGFC SGDNRGRRDV GEPSGGTAAR TMQEAREELR QAMAEKAAAD EARAQAKRQG ELAEQELASA
401: KRMRHQAQVE LSRAHALREH AVRQVNATLL QITCFSCRQK FRAVRPSAAM SSEVACSYVT EGGDVEVDNV DEPLILDGMR RRQQHATMDT M
101: AARKRVFVCP EPSCLHHDPS HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CTAGCPQAGA
201: GVAAPACGVA AAPSSQQQAP PPAISLSRSR TASSTSPSSD VVISAVTWPG AAAMRSPNPA AFHRFEQQVP SPRTPQPDGR GGGGHNLELQ LMPPSSGSTV
301: GAAAPLGVAP SWYAAPQSPP APISQGDNAA MQLQLSIGFC SGDNRGRRDV GEPSGGTAAR TMQEAREELR QAMAEKAAAD EARAQAKRQG ELAEQELASA
401: KRMRHQAQVE LSRAHALREH AVRQVNATLL QITCFSCRQK FRAVRPSAAM SSEVACSYVT EGGDVEVDNV DEPLILDGMR RRQQHATMDT M
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.