Factsheet for PGSC0003DMT400079735

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098070.2.1	Tomato	nucleus	81.24	97.53
PGSC0003DMT400069306	Potato	nucleus	63.39	67.4
VIT_17s0000g01870.t01	Wine grape	nucleus	69.34	66.59
KRH60588	Soybean	nucleus	60.87	66.5
KRH41885	Soybean	nucleus	56.52	65.0
KRH38986	Soybean	nucleus	68.88	63.5
KRH48724	Soybean	nucleus	68.65	62.11
GSMUA_Achr7P18610_001	Banana	nucleus	53.09	61.38
GSMUA_Achr5P23130_001	Banana	nucleus	51.49	59.21
GSMUA_Achr10P...	Banana	nucleus	49.2	56.14
GSMUA_Achr6P02490_001	Banana	nucleus	47.37	55.95
GSMUA_Achr3P20220_001	Banana	nucleus	53.09	54.72
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	45.08	51.44
Zm00001d005871_P002	Maize	nucleus	51.72	51.25
GSMUA_Achr10P...	Banana	nucleus	46.0	50.38
TraesCS5D01G240600.1	Wheat	nucleus	56.29	50.1
TraesCS5B01G232200.1	Wheat	nucleus	55.84	49.59
TraesCS5A01G233700.1	Wheat	nucleus	55.61	49.49
TraesCS4B01G230800.1	Wheat	nucleus, plastid	44.39	47.9
Zm00001d020683_P001	Maize	nucleus	54.23	47.69
Zm00001d031759_P001	Maize	nucleus	56.06	47.3
EER96827	Sorghum	nucleus	54.0	47.29
Os08t0467100-01	Rice	nucleus	56.98	46.72
TraesCS4D01G232000.1	Wheat	nucleus, plastid	44.16	46.62
TraesCS4A01G074700.1	Wheat	nucleus, plastid	43.94	46.27
HORVU4Hr1G064740.2	Barley	nucleus, plastid	44.39	45.65
EES13982	Sorghum	nucleus	55.84	45.52
Zm00001d028361_P001	Maize	nucleus, plastid	46.68	45.13
Zm00001d047976_P001	Maize	nucleus, plastid	46.0	44.87
Os03t0237250-01	Rice	plastid	44.62	44.52
KXG39813	Sorghum	nucleus, plastid	46.22	44.01
PGSC0003DMT400004390	Potato	nucleus	27.92	26.75
PGSC0003DMT400021189	Potato	nucleus	28.15	26.28
PGSC0003DMT400063501	Potato	nucleus	21.51	26.11
PGSC0003DMT400027159	Potato	nucleus	29.29	26.02
PGSC0003DMT400013174	Potato	nucleus	29.29	25.3
PGSC0003DMT400020945	Potato	nucleus	28.83	25.15
PGSC0003DMT400049788	Potato	nucleus	26.77	24.53
PGSC0003DMT400033039	Potato	nucleus, plastid	29.29	24.38
PGSC0003DMT400012504	Potato	nucleus	27.92	24.3
PGSC0003DMT400008694	Potato	nucleus, plastid	29.06	24.05
PGSC0003DMT400006385	Potato	nucleus	29.75	24.03
PGSC0003DMT400029550	Potato	nucleus	24.71	23.84
PGSC0003DMT400024272	Potato	nucleus	27.0	23.84
PGSC0003DMT400075837	Potato	nucleus	27.23	22.97
PGSC0003DMT400040064	Potato	nucleus	31.81	18.89

Protein Annotations

EntrezGene:102603699	MapMan:15.5.15	Gene3D:3.30.160.60	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	UniProt:M1D2C6	PFAM:PF00096	EnsemblPlantsGene:PGSC0003DMG400031049
PGSC:PGSC0003DMG400031049	EnsemblPlants:PGSC0003DMT400079735	ScanProsite:PS00028	ScanProsite:PS01359	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF43	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000295C817	RefSeq:XP_006364371.1	RefSeq:XP_015159408.1
RefSeq:XP_015159409.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031049]

Coordinates

chr3:+:45143140..45146123

Molecular Weight (calculated)

48833.0 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.821

Length

437 amino acids

Sequence
(BLAST)

001: MLSNNNPSSS SDPFNSSENA NNASRRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV RKRVFVCPEP
101: TCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS MGRLRSESQS LHPPCLSRTA
201: SSTPSPSSDT NVSTTPWSST LLKKLSSAAA AATHHANPNI IKSCTNKHNL ELQLLTTTTS SSSPAFDVSV SSKPNEDHSA YNLQLSIGSS DFNESSENAN
301: EKRSSDALRL KDEAMEQLRV AMSEKAYAEE ARQQAKRQIE LAEQEFANAK RIRQQAQAEL DKANALKEHA IKQINSTLSQ ITCHSCKQKF QSTTRVSIVD
401: ENNSLALSYI SSGLSEGHHH EVANNINQNE HLKLSQR

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.