Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g080130.2.1 | Tomato | nucleus | 95.06 | 96.01 |
| VIT_18s0001g12220.t01 | Wine grape | nucleus, plastid | 47.83 | 48.79 |
| KRH61193 | Soybean | nucleus | 43.08 | 46.09 |
| KRH51873 | Soybean | nucleus | 42.49 | 45.84 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 46.05 | 44.38 |
| PGSC0003DMT400063501 | Potato | nucleus | 29.84 | 41.94 |
| PGSC0003DMT400004390 | Potato | nucleus | 35.18 | 39.04 |
| PGSC0003DMT400021189 | Potato | nucleus | 35.97 | 38.89 |
| PGSC0003DMT400049788 | Potato | nucleus | 34.59 | 36.69 |
| PGSC0003DMT400029550 | Potato | nucleus | 32.81 | 36.64 |
| PGSC0003DMT400024272 | Potato | nucleus | 35.77 | 36.57 |
| PGSC0003DMT400027159 | Potato | nucleus | 35.18 | 36.18 |
| PGSC0003DMT400020945 | Potato | nucleus | 35.77 | 36.13 |
| PGSC0003DMT400012504 | Potato | nucleus | 35.57 | 35.86 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 37.15 | 35.61 |
| PGSC0003DMT400006385 | Potato | nucleus | 37.75 | 35.3 |
| PGSC0003DMT400075837 | Potato | nucleus | 35.38 | 34.56 |
| PGSC0003DMT400069306 | Potato | nucleus | 24.51 | 30.17 |
| PGSC0003DMT400040064 | Potato | nucleus | 43.48 | 29.89 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 25.3 | 29.29 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400013174 | EnsemblPlantsGene:PGSC0003DMG400005147 | EntrezGene:102594833 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF100 |
| PFAM:PF00096 | PFscan:PS50157 | PGSC:PGSC0003DMG400005147 | RefSeq:XP_015161879.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000296CF43 | UniProt:M1A2F2 | MapMan:15.5.15 | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005147]
Coordinates
chr4:-:69530498..69533704
Molecular Weight (calculated)
54775.5 Da
IEP (calculated)
8.109
GRAVY (calculated)
-0.483
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MADIEKLAGS GSLEESITQQ NFPVKRRRNL PGNPDPEAEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTSNEV KKRVYVCPES
101: SCVHHDPSRA LGDLTGIKKH FCRKHGEKKF KCERCTKKYA VHSDWKAHMK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARSHQ PLMEDTNAEG
201: DLKVDEAINK TVSSSSSPPP QPLTPSTGVL SPVLSIHSSE LPVENQNQGG VQLQQAQGTT THVSTTPVIT ISTAAASGPS SSKVFASVFP SSSSAQHVNS
301: SYSDILRAIE TEQVMAVEPM SLSLSSSLYL SNNGPSLFQE HTGGHSHGHG QHYGSATMQP ALSATALLQK AAQMGSTTSN NSFLRGLGLA MSSSTSTPEE
401: NLLARRTNSL GHVKLESNIN AEVPGLGIQL HGHSGFTDFR MGPSISHQTS MMFGSKPPTL DFLGLGNGAS VTPSNGFSAF LSSMEDGFGV VAEPWDDPSD
501: RKPAML
101: SCVHHDPSRA LGDLTGIKKH FCRKHGEKKF KCERCTKKYA VHSDWKAHMK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARSHQ PLMEDTNAEG
201: DLKVDEAINK TVSSSSSPPP QPLTPSTGVL SPVLSIHSSE LPVENQNQGG VQLQQAQGTT THVSTTPVIT ISTAAASGPS SSKVFASVFP SSSSAQHVNS
301: SYSDILRAIE TEQVMAVEPM SLSLSSSLYL SNNGPSLFQE HTGGHSHGHG QHYGSATMQP ALSATALLQK AAQMGSTTSN NSFLRGLGLA MSSSTSTPEE
401: NLLARRTNSL GHVKLESNIN AEVPGLGIQL HGHSGFTDFR MGPSISHQTS MMFGSKPPTL DFLGLGNGAS VTPSNGFSAF LSSMEDGFGV VAEPWDDPSD
501: RKPAML
001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
Arabidopsis Description
IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.