Factsheet for PGSC0003DMT400008694

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004390
PGSC0003DMT400008694
PGSC0003DMT400024272
PGSC0003DMT400027159
PGSC0003DMT400043358
PGSC0003DMT400055239

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	PGSC0003DMT400024272	AT1G03840.1	17785527
AT5G03150.1	PGSC0003DMT400043358	AT3G54220.1	17785527
AT5G03150.1	PGSC0003DMT400055239	AT4G37650.1	17785527
AT5G03150.1	PGSC0003DMT400004390	AT5G03150.1	17785527
AT5G03150.1	PGSC0003DMT400008694	AT5G03150.1	17785527
AT5G03150.1	PGSC0003DMT400027159	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075250.2.1	Tomato	nucleus, plastid	95.64	95.64
PGSC0003DMT400020945	Potato	nucleus	61.55	64.87
PGSC0003DMT400027159	Potato	nucleus	47.73	51.22
PGSC0003DMT400063501	Potato	nucleus	30.3	44.44
PGSC0003DMT400004390	Potato	nucleus	37.88	43.86
VIT_08s0040g02100.t01	Wine grape	nucleus	39.77	42.68
GSMUA_Achr7P22720_001	Banana	mitochondrion	22.35	41.99
KRH19850	Soybean	nucleus	39.96	40.19
CDY44344	Canola	nucleus	37.69	39.8
AT5G03150.1	Thale cress	nucleus	37.88	39.76
KRG95964	Soybean	nucleus	38.26	39.61
KRH32442	Soybean	nucleus	39.77	39.47
CDY11241	Canola	nucleus	37.5	39.36
KRH67672	Soybean	nucleus	38.26	39.3
Bra005741.1-P	Field mustard	nucleus	37.31	39.09
CDY10404	Canola	nucleus	37.5	39.05
CDX80854	Canola	nucleus	37.31	39.01
PGSC0003DMT400021189	Potato	nucleus	34.28	38.68
Bra009549.1-P	Field mustard	nucleus	37.69	38.57
CDX70328	Canola	nucleus	37.5	38.52
PGSC0003DMT400049788	Potato	nucleus	33.9	37.53
PGSC0003DMT400013174	Potato	nucleus	35.61	37.15
PGSC0003DMT400012504	Potato	nucleus	35.23	37.05
PGSC0003DMT400024272	Potato	nucleus	34.66	36.97
PGSC0003DMT400075837	Potato	nucleus	36.17	36.87
PGSC0003DMT400033039	Potato	nucleus, plastid	36.36	36.57
PGSC0003DMT400029550	Potato	nucleus	30.3	35.32
PGSC0003DMT400006385	Potato	nucleus	35.61	34.75
PGSC0003DMT400069306	Potato	nucleus	23.86	30.66
PGSC0003DMT400079735	Potato	nucleus, plastid	24.05	29.06
PGSC0003DMT400040064	Potato	nucleus	33.9	24.32

Protein Annotations

EntrezGene:102601471	MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	InterPro:JKD-like	UniProt:M0ZUY6	PFAM:PF12171	EnsemblPlantsGene:PGSC0003DMG400003372
PGSC:PGSC0003DMG400003372	EnsemblPlants:PGSC0003DMT400008694	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF42
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000294A5ED	RefSeq:XP_006365738.1	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003372]

Coordinates

chr6:-:55860945..55863589

Molecular Weight (calculated)

58095.9 Da

IEP (calculated)

9.235

GRAVY (calculated)

-0.780

Length

528 amino acids

Sequence
(BLAST)

001: MMSDDGLSSL AFIQDPNSNP SSNNPNPNSN PSAKRKRNLP GKPDPDAEVI ALSPKSLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKNEVI
101: KKKVYICPEK TCIHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHTK ICGTREYKCD CGTLFSRKDS FITHRAFCDA LAEESARFTS
201: VPSTANLNFR NEILLNGEFG NTNVQHSTGN PQFGSNLFRP EFMGLGLDPA ISHHHHQPQL NNVDGQKPRI PLWLDNNMNP NPGNDFLVAS SSSTTSNLPH
301: HELVQIAAHN NNQQWFINGD DSGIGSSSSQ LPSRVLLKEE EENKRNMSDT ISSMYYNNHH NETTAPATHM SATALLQKAA QMGSTRSNSA LFGAGFGLMG
401: SSFSKTNGQG QFAAHDQNFN GLMMNSPSTA TNNISNQGNR LLFGDMNSSS LEGNASGKNS DPYNLMPRNN KGKQVNLSGN EAIEGGLTRD FLGVGGNESR
501: PFLSKNELAK FGNISGSAMG LSDYSGSH

Best Arabidopsis Sequence Match ( AT5G03150.1 )
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG

Arabidopsis Description

JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.