Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g069240.1.1 | Tomato | nucleus | 82.04 | 91.54 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 64.87 | 61.55 |
| VIT_06s0004g03070.t01 | Wine grape | nucleus | 55.29 | 55.51 |
| PGSC0003DMT400027159 | Potato | nucleus | 48.1 | 48.98 |
| PGSC0003DMT400004390 | Potato | nucleus | 38.32 | 42.11 |
| PGSC0003DMT400063501 | Potato | nucleus | 30.14 | 41.94 |
| PGSC0003DMT400021189 | Potato | nucleus | 38.32 | 41.03 |
| KRH24905 | Soybean | nucleus | 41.12 | 38.08 |
| PGSC0003DMT400075837 | Potato | nucleus | 37.92 | 36.68 |
| KRG89014 | Soybean | nucleus | 41.72 | 36.41 |
| PGSC0003DMT400024272 | Potato | nucleus | 35.93 | 36.36 |
| PGSC0003DMT400049788 | Potato | nucleus | 34.33 | 36.06 |
| PGSC0003DMT400006385 | Potato | nucleus | 38.72 | 35.86 |
| PGSC0003DMT400012504 | Potato | nucleus | 35.93 | 35.86 |
| PGSC0003DMT400013174 | Potato | nucleus | 36.13 | 35.77 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 36.73 | 35.05 |
| PGSC0003DMT400029550 | Potato | nucleus | 30.54 | 33.77 |
| PGSC0003DMT400069306 | Potato | nucleus | 24.15 | 29.44 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 25.15 | 28.83 |
| PGSC0003DMT400040064 | Potato | nucleus | 35.13 | 23.91 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400020945 | EnsemblPlantsGene:PGSC0003DMG400008110 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:JKD-like | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF42 |
| PFAM:PF00096 | PFscan:PS50157 | PGSC:PGSC0003DMG400008110 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI000294C25E | UniProt:M1AEC3 | MapMan:15.5.15 | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008110]
Coordinates
chr11:+:41172131..41175486
Molecular Weight (calculated)
55784.4 Da
IEP (calculated)
9.706
GRAVY (calculated)
-0.825
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDGLSCSM RGGFTFIQDP KNPSTNINHP NPNPNSNPNV SCANKRKRNL PGNPDPDAEV IALSPTSLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW
101: KLKQRNNKEV IKKKVYICPE KSCVHHDPSR ALGDLTGVKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTKEYKC DCGTLFSRKD SFITHRAFCD
201: ALAEESTRFT SIPTATNLNN LRNQLINGGI STNLQQQQQQ MSGNISQLMG LGSLDPSNQL NLDHGQKTRL PLWLHHNNAN YGNPNDFLST PSTTTSTLAH
301: ELVQMAPHTS MLGLSSSQNN NNNNNNNNNQ WFVNDDGGGA ITTTSSSMPR VLKEEEENKT LSPMYYNNNH MSATALLQKA AQIGSTIHHN NSPLFSNQFG
401: LMTSSSLNMM NNSSSSSATN VAIHENIQGN NGLLIGATNS TSFVANNANT LMMIQDKGKQ GYLTRDFLGV GRNEKRPFLQ QTHEMAKFDN NNNNNNNSRI
501: F
101: KLKQRNNKEV IKKKVYICPE KSCVHHDPSR ALGDLTGVKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTKEYKC DCGTLFSRKD SFITHRAFCD
201: ALAEESTRFT SIPTATNLNN LRNQLINGGI STNLQQQQQQ MSGNISQLMG LGSLDPSNQL NLDHGQKTRL PLWLHHNNAN YGNPNDFLST PSTTTSTLAH
301: ELVQMAPHTS MLGLSSSQNN NNNNNNNNNQ WFVNDDGGGA ITTTSSSMPR VLKEEEENKT LSPMYYNNNH MSATALLQKA AQIGSTIHHN NSPLFSNQFG
401: LMTSSSLNMM NNSSSSSATN VAIHENIQGN NGLLIGATNS TSFVANNANT LMMIQDKGKQ GYLTRDFLGV GRNEKRPFLQ QTHEMAKFDN NNNNNNNSRI
501: F
001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ
Arabidopsis Description
IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.