Factsheet for PGSC0003DMT400040064

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062940.2.1	Tomato	nucleus	85.46	95.88
PGSC0003DMT400033039	Potato	nucleus, plastid	50.82	71.24
VIT_04s0023g01430.t01	Wine grape	nucleus	42.66	62.06
KRH76829	Soybean	nucleus	41.03	58.41
KRH08298	Soybean	nucleus	40.08	57.73
KRH69941	Soybean	nucleus, plastid	40.08	56.19
KRH69942	Soybean	nucleus	40.08	56.19
CDX77936	Canola	nucleus	33.02	55.73
CDY24490	Canola	nucleus	32.88	55.63
Bra036098.1-P	Field mustard	nucleus, plastid	32.88	55.5
AT3G50700.1	Thale cress	nucleus	33.7	54.87
CDY67009	Canola	nucleus	34.65	53.57
AT5G66730.1	Thale cress	nucleus	36.28	53.4
CDX81372	Canola	nucleus	34.92	52.56
Bra037151.1-P	Field mustard	nucleus	34.92	52.24
CDY57128	Canola	nucleus	34.65	51.83
GSMUA_Achr4P14030_001	Banana	nucleus	33.42	45.3
TraesCS4A01G041400.1	Wheat	nucleus	29.62	44.76
EER95332	Sorghum	nucleus	31.25	43.81
PGSC0003DMT400013174	Potato	nucleus	29.89	43.48
GSMUA_Achr7P25960_001	Banana	nucleus	34.92	43.41
GSMUA_Achr3P29940_001	Banana	nucleus	33.97	43.03
TraesCS4B01G262400.1	Wheat	nucleus	30.84	42.99
Os03t0197800-00	Rice	nucleus	32.2	42.93
Zm00001d028139_P001	Maize	nucleus	31.39	42.86
TraesCS4D01G262500.1	Wheat	nucleus	30.43	42.59
GSMUA_Achr4P07200_001	Banana	nucleus	30.98	42.22
HORVU4Hr1G070950.8	Barley	nucleus	30.71	42.16
PGSC0003DMT400063501	Potato	nucleus	19.7	40.28
PGSC0003DMT400004390	Potato	nucleus	23.64	38.16
PGSC0003DMT400021189	Potato	nucleus	23.51	36.97
PGSC0003DMT400049788	Potato	nucleus	23.64	36.48
PGSC0003DMT400029550	Potato	nucleus	22.28	36.2
PGSC0003DMT400024272	Potato	nucleus	24.18	35.96
PGSC0003DMT400027159	Potato	nucleus	23.51	35.16
PGSC0003DMT400020945	Potato	nucleus	23.91	35.13
PGSC0003DMT400006385	Potato	nucleus	25.54	34.75
PGSC0003DMT400012504	Potato	nucleus	23.64	34.66
PGSC0003DMT400008694	Potato	nucleus, plastid	24.32	33.9
PGSC0003DMT400075837	Potato	nucleus	23.23	33.01
PGSC0003DMT400079735	Potato	nucleus, plastid	18.89	31.81
PGSC0003DMT400069306	Potato	nucleus	17.26	30.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400040064	EnsemblPlantsGene:PGSC0003DMG400015498	EntrezGene:102583951	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF20
PFAM:PF00096	PFscan:PS50157	PGSC:PGSC0003DMG400015498	RefSeq:XP_006346936.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029678EB	UniProt:M1B988	MapMan:15.5.15	:

Description

Zinc finger, C2H2 type family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015498]

Coordinates

chr2:+:21468611..21472447

Molecular Weight (calculated)

75370.6 Da

IEP (calculated)

7.800

GRAVY (calculated)

-0.195

Length

736 amino acids

Sequence
(BLAST)

001: MNDCAGSGEV SVLSSGEQAA PCKEAAKKKR NLPGMPDPNA EVVALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRASN EVRKRVYVCP
101: ELTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC DVLAKDTEKA QNAVTTPIAD
201: EDHKVQVVVS STPQTPPTPP PSLEPPAVPS PAALEPLPPP VSPSTAVVSS DSPIQNPESP HTNSNGTITK QDIEETTAKS SLSGICSSSS CTGCTNSNCF
301: TSLTGICSSS WSSSSNGSTS SSSIFPSLTG ICGSTRSSSS NGSTGSISVF PSLSGICSNS RSSSSNGSTH SSSIFSSSTG ICSSSIFPSS TGICSGSSIF
401: SSSTGICSSS IFPSSTGICS GSSIFSSSTG ICSSSIFPSS TGICSGSSIF SSSTGICSSS IFPSSTGICS GSSIFASSTG IYSNSSSSSC NRSTSGSSIF
501: TSLTGICSSS SNSSSNRSAS NSTFASLFAS STASGSLPSQ APQFTDWFQS VAPAPPPDIE PPSSMEPISL CLAMNHSSSV FGPAGQERIQ YAAAPQPSMS
601: ATALLQKAAQ MGATATNSSL LRGLGILSSS SSSSGQHEWN GRQIDTDGAT LAAGLGLGLP CDDGSGLKEL MLGTPSVFGP KHPTLDLLGL GMAAGGGSTP
701: GLSALITSMG GNLDVAAAAG PFDSGEFCGK EFGRSS

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.