Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G041400.1 | Wheat | nucleus | 84.51 | 93.02 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 91.42 | 92.8 |
| TraesCS4D01G262500.1 | Wheat | nucleus | 89.55 | 91.25 |
| EER95332 | Sorghum | nucleus | 71.08 | 72.57 |
| Zm00001d028139_P001 | Maize | nucleus | 71.83 | 71.43 |
| Os03t0197800-00 | Rice | nucleus | 73.13 | 71.01 |
| AT3G50700.1 | Thale cress | nucleus | 41.79 | 49.56 |
| Bra036098.1-P | Field mustard | nucleus, plastid | 40.11 | 49.31 |
| CDX77936 | Canola | nucleus | 39.93 | 49.08 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 46.27 | 49.01 |
| CDY24490 | Canola | nucleus | 39.74 | 48.97 |
| KRH76829 | Soybean | nucleus | 44.78 | 46.42 |
| CDX81372 | Canola | nucleus | 41.98 | 46.01 |
| CDY67009 | Canola | nucleus | 40.67 | 45.8 |
| Bra037151.1-P | Field mustard | nucleus | 41.98 | 45.73 |
| CDY57128 | Canola | nucleus | 41.79 | 45.53 |
| AT5G66730.1 | Thale cress | nucleus | 42.35 | 45.4 |
| GSMUA_Achr7P25960_001 | Banana | nucleus | 49.81 | 45.1 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 43.66 | 44.57 |
| GSMUA_Achr4P14030_001 | Banana | nucleus | 44.22 | 43.65 |
| KRH08298 | Soybean | nucleus | 41.6 | 43.64 |
| KRH69941 | Soybean | nucleus, plastid | 42.35 | 43.24 |
| KRH69942 | Soybean | nucleus | 42.35 | 43.24 |
| GSMUA_Achr3P29940_001 | Banana | nucleus | 45.52 | 42.0 |
| HORVU3Hr1G049810.3 | Barley | nucleus | 34.51 | 40.13 |
| GSMUA_Achr4P07200_001 | Banana | nucleus | 39.37 | 39.07 |
| Solyc02g062940.2.1 | Tomato | nucleus | 41.98 | 34.3 |
| PGSC0003DMT400040064 | Potato | nucleus | 42.16 | 30.71 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 22.57 | 28.47 |
| HORVU2Hr1G036710.3 | Barley | nucleus | 35.63 | 22.0 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G070950.8 | EnsemblPlantsGene:HORVU4Hr1G070950 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF20 |
| PFAM:PF00096 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI000B475706 | UniProt:A0A287PKA7 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:578425738..578428275
Molecular Weight (calculated)
56548.1 Da
IEP (calculated)
8.916
GRAVY (calculated)
-0.479
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDTSSAAA KTGGAQPQLP PPGPPAKKKR ALPGMPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSGK EVRKRVYVCP
101: EPSCVHHDAS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK YAVQSDWKAH TKTCGSREYR CDCGTLFSRR DSFITHRAFC DALAEESAKA RAPPAEDASS
201: GAAGPLALPP LQAPLPAAPA PLQQLPPAPA PQQHEEQGQV KFDSTVEREI VSAAPEPVVQ YTPPAALMPS PPSLNGANVS ASTSSVSATS QSLLGSIFAP
301: SSVAQAPQYP ERALAAKPPS LCLATDAASA QFSAPDADRQ QQLAPPPPSP SPSAHMSATA LLQKAAQMGA TSSSSSFLRG LGLDISSSSP ASTSSGQQQH
401: HQHHQQHQEA MQMPFPDGSS LQQWPPRLEP EPAPMMSAGL GLGLPYDSTG GPMGLPELMM GQSTLFSAKP ATLDFLGLGM SPTGAATSRG LPVFMQPMGG
501: AVGMARSGSG AAETFGSGRS AQPKPWERNP SSSPIL
101: EPSCVHHDAS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK YAVQSDWKAH TKTCGSREYR CDCGTLFSRR DSFITHRAFC DALAEESAKA RAPPAEDASS
201: GAAGPLALPP LQAPLPAAPA PLQQLPPAPA PQQHEEQGQV KFDSTVEREI VSAAPEPVVQ YTPPAALMPS PPSLNGANVS ASTSSVSATS QSLLGSIFAP
301: SSVAQAPQYP ERALAAKPPS LCLATDAASA QFSAPDADRQ QQLAPPPPSP SPSAHMSATA LLQKAAQMGA TSSSSSFLRG LGLDISSSSP ASTSSGQQQH
401: HQHHQQHQEA MQMPFPDGSS LQQWPPRLEP EPAPMMSAGL GLGLPYDSTG GPMGLPELMM GQSTLFSAKP ATLDFLGLGM SPTGAATSRG LPVFMQPMGG
501: AVGMARSGSG AAETFGSGRS AQPKPWERNP SSSPIL
001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
Arabidopsis Description
IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.