Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G041400.1 | Wheat | nucleus | 88.21 | 95.28 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 94.11 | 93.75 |
| HORVU4Hr1G070950.8 | Barley | nucleus | 91.25 | 89.55 |
| EER95332 | Sorghum | nucleus | 73.19 | 73.33 |
| Zm00001d028139_P001 | Maize | nucleus | 73.38 | 71.61 |
| Os03t0197800-00 | Rice | nucleus | 75.1 | 71.56 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 47.34 | 49.21 |
| AT3G50700.1 | Thale cress | nucleus | 41.83 | 48.67 |
| Bra036098.1-P | Field mustard | nucleus, plastid | 40.3 | 48.62 |
| CDX77936 | Canola | nucleus | 40.11 | 48.39 |
| CDY24490 | Canola | nucleus | 39.92 | 48.28 |
| KRH76829 | Soybean | nucleus | 46.2 | 47.0 |
| CDY67009 | Canola | nucleus | 41.44 | 45.8 |
| CDX81372 | Canola | nucleus | 42.21 | 45.4 |
| Bra037151.1-P | Field mustard | nucleus | 42.4 | 45.33 |
| CDY57128 | Canola | nucleus | 42.21 | 45.12 |
| AT5G66730.1 | Thale cress | nucleus | 42.59 | 44.8 |
| GSMUA_Achr7P25960_001 | Banana | nucleus | 50.19 | 44.59 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 44.3 | 44.38 |
| KRH08298 | Soybean | nucleus | 42.78 | 44.03 |
| GSMUA_Achr4P14030_001 | Banana | nucleus | 45.44 | 44.01 |
| KRH69941 | Soybean | nucleus, plastid | 43.73 | 43.81 |
| KRH69942 | Soybean | nucleus | 43.73 | 43.81 |
| GSMUA_Achr3P29940_001 | Banana | nucleus | 46.77 | 42.34 |
| TraesCS6D01G116300.1 | Wheat | nucleus | 31.75 | 40.93 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 36.69 | 39.31 |
| GSMUA_Achr4P07200_001 | Banana | nucleus | 40.3 | 39.26 |
| TraesCS3D01G209800.1 | Wheat | nucleus | 35.36 | 39.24 |
| TraesCS3D01G107300.1 | Wheat | nucleus | 35.74 | 38.52 |
| TraesCS3D01G449900.1 | Wheat | nucleus | 35.36 | 36.54 |
| TraesCS2D01G287500.1 | Wheat | nucleus | 30.8 | 35.14 |
| TraesCS4D01G294900.1 | Wheat | nucleus | 31.94 | 34.71 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 35.55 | 34.19 |
| Solyc02g062940.2.1 | Tomato | nucleus | 42.59 | 34.15 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 37.07 | 33.74 |
| PGSC0003DMT400040064 | Potato | nucleus | 42.59 | 30.43 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 37.45 | 29.76 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 23.19 | 29.47 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 24.33 | 26.07 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 40.68 | 25.33 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G262500.1 | EnsemblPlantsGene:TraesCS4D01G262500 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF20 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr4D:-:433391356..433393868
Molecular Weight (calculated)
55663.1 Da
IEP (calculated)
9.052
GRAVY (calculated)
-0.546
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDTSSATA KSGGAQPHTL LPPPGPPAKK KRALPGMPDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS GKEVRKRVYV
101: CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHAKTCGSRE YRCDCGTLFS RRDSFITHRA FCDALAEESA KARAPPPEDG
201: SSGAAAPQAP PPAAPVPLQQ LPPAPAPAPA PQQHEEQERE IGAAPEPVVY TPPAPLMPSP PSVNGANVSA STSSVAATSQ SLLGSMFAPS SVAQTAQYPE
301: RALAAKPPSL CLATDAASAQ FSAPTADRQQ QLVQPPPSPS PSAHMSATAL LQKAAQMGAT SSSSSFLRGL GLDISSSPPA STSSGQHQQQ HHHHQQHHQE
401: PMQMQFPEGS LQQWPPRLEP EPAPMMSAGL GLGLPYDSTG GPMGLPELMM GQSSLFSAKP ATLDFLGLGM SPTGATTSRG LPVFMQPMGG AVGMARTGSG
501: PPDTFGSGRG AQAKPWERNP SSSPIL
101: CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHAKTCGSRE YRCDCGTLFS RRDSFITHRA FCDALAEESA KARAPPPEDG
201: SSGAAAPQAP PPAAPVPLQQ LPPAPAPAPA PQQHEEQERE IGAAPEPVVY TPPAPLMPSP PSVNGANVSA STSSVAATSQ SLLGSMFAPS SVAQTAQYPE
301: RALAAKPPSL CLATDAASAQ FSAPTADRQQ QLVQPPPSPS PSAHMSATAL LQKAAQMGAT SSSSSFLRGL GLDISSSPPA STSSGQHQQQ HHHHQQHHQE
401: PMQMQFPEGS LQQWPPRLEP EPAPMMSAGL GLGLPYDSTG GPMGLPELMM GQSSLFSAKP ATLDFLGLGM SPTGATTSRG LPVFMQPMGG AVGMARTGSG
501: PPDTFGSGRG AQAKPWERNP SSSPIL
001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
Arabidopsis Description
IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.