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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH69941 Soybean nucleus, plastid 90.8 88.38
KRH69942 Soybean nucleus 90.8 88.38
KRH76829 Soybean nucleus 76.52 75.63
VIT_04s0023g01430.t01 Wine grape nucleus 68.3 68.97
AT3G50700.1 Thale cress nucleus 52.45 59.29
CDX77936 Canola nucleus 49.9 58.49
Bra036098.1-P Field mustard nucleus, plastid 49.71 58.26
CDY24490 Canola nucleus 49.51 58.16
AT5G66730.1 Thale cress nucleus 55.19 56.4
PGSC0003DMT400033039 Potato nucleus, plastid 57.53 56.0
CDY67009 Canola nucleus 51.86 55.67
KRH67268 Soybean nucleus 28.18 55.17
CDX81372 Canola nucleus 51.66 53.99
Bra037151.1-P Field mustard nucleus 51.66 53.66
CDY57128 Canola nucleus 51.47 53.46
GSMUA_Achr4P14030_001 Banana nucleus 51.47 48.43
GSMUA_Achr7P25960_001 Banana nucleus 54.21 46.79
GSMUA_Achr3P29940_001 Banana nucleus 52.45 46.13
KRH51873 Soybean nucleus 42.07 45.84
Solyc02g062940.2.1 Tomato nucleus 58.12 45.27
KRH61193 Soybean nucleus 41.88 45.24
Zm00001d028139_P001 Maize nucleus 46.58 44.16
EER95332 Sorghum nucleus 44.81 43.62
KRH15560 Soybean nucleus 34.64 43.38
GSMUA_Achr4P07200_001 Banana nucleus 45.6 43.15
TraesCS4A01G041400.1 Wheat nucleus 41.1 43.12
TraesCS4D01G262500.1 Wheat nucleus 44.03 42.78
TraesCS4B01G262400.1 Wheat nucleus 43.84 42.42
KRH05443 Soybean nucleus 36.4 42.27
KRG89168 Soybean nucleus, plastid 28.38 41.67
HORVU4Hr1G070950.8 Barley nucleus 43.64 41.6
Os03t0197800-00 Rice nucleus 44.81 41.49
KRH10015 Soybean nucleus 38.16 41.05
KRH22332 Soybean nucleus 37.57 40.51
KRH47108 Soybean nucleus 39.33 40.36
KRH23306 Soybean nucleus 37.77 40.21
PGSC0003DMT400040064 Potato nucleus 57.73 40.08
KRG95590 Soybean nucleus 35.42 39.35
KRH25657 Soybean nucleus 36.2 39.28
KRH26995 Soybean nucleus 36.79 39.17
KRH71370 Soybean nucleus 34.83 38.86
KRH55868 Soybean nucleus 36.01 38.82
KRH32064 Soybean nucleus 35.03 38.66
KRH49655 Soybean nucleus 27.01 38.12
KRH44134 Soybean nucleus 39.33 37.92
KRH68150 Soybean nucleus 33.27 37.53
KRG92880 Soybean nucleus 38.55 37.24
KRH33908 Soybean nucleus, plastid 38.36 36.7
KRH32442 Soybean nucleus 37.96 36.47
KRG96409 Soybean nucleus 38.16 36.45
KRH19850 Soybean nucleus 37.38 36.38
KRH71547 Soybean nucleus 30.92 36.32
KRG95964 Soybean nucleus 36.2 36.27
KRH67672 Soybean nucleus 36.4 36.19
KRH68532 Soybean nucleus 36.2 36.13
KRG96824 Soybean nucleus 35.81 36.09
KRG90705 Soybean nucleus 39.92 35.98
KRH36039 Soybean nucleus 39.53 35.38
KRH24905 Soybean nucleus 36.4 34.38
KRH26399 Soybean nucleus 33.46 34.2
KRH49489 Soybean nucleus, plastid 35.23 33.77
KRG91985 Soybean nucleus 36.99 33.75
KRH34792 Soybean nucleus 36.59 33.69
KRH22919 Soybean nucleus 33.46 33.6
KRG89014 Soybean nucleus 37.57 33.45
KRH41885 Soybean nucleus 24.85 33.42
KRH49485 Soybean nucleus 35.23 33.15
KRG89167 Soybean nucleus, plastid 35.03 32.6
KRH60588 Soybean nucleus 25.44 32.5
KRH58582 Soybean nucleus 26.22 30.45
KRH42485 Soybean nucleus 26.61 30.09
KRH38986 Soybean nucleus 27.59 29.75
KRH48724 Soybean nucleus 27.2 28.78
Protein Annotations
EntrezGene:100783947MapMan:15.5.15Gene3D:3.30.160.60EMBL:ACUP02010161EnsemblPlantsGene:GLYMA_16G141100GO:GO:0003674
GO:GO:0003676GO:GO:0005488UniProt:I1MNH4InterPro:IPR013087ProteinID:KRH08297.1EnsemblPlants:KRH08298
ProteinID:KRH08298ProteinID:KRH08298.1PFAM:PF00096ScanProsite:PS00028PFscan:PS50157PANTHER:PTHR10593
PANTHER:PTHR10593:SF20SMART:SM00355SUPFAM:SSF57667UniParc:UPI000233BBCCInterPro:Znf_C2H2_sfInterPro:Znf_C2H2_type
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr16:+:29893194..29896920
Molecular Weight (calculated)
53001.2 Da
IEP (calculated)
7.597
GRAVY (calculated)
-0.326
Length
511 amino acids
Sequence
(BLAST)
001: MPVDLDNAST ASGEAASVSS SGHQTKPAVP KKKRNLPGMP DPEAEVIALS PTALLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVRKRV
101: YVCPEPTCVH HDPARALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKVCGT REYKCDCGTV FSRRDSFITH RAFCDVLAEE NVRSHAVVKD
201: NSENDSKVLT LTGDSPPLQP VSATVATTTT QTNSAMSCGL QTQNLELPET NPPQVIEEEP QGATAVSGSC GSNSTCSTSN GGATSNSNSS SSVFAGLFAS
301: STASGSLQSQ TPAFSDLIRA MGPPEHPADL ISAPSSSEAI SLCLSTTSAS PIFATGGQQY VSSPPQPAMS ATALLQKAAQ MGAAATNASL LRGFGIVSSS
401: SLASTSSGQQ NGLQWGQQQL ESESGSVPAA GLGLGLPCED GGSGLKELMM GTPSMFGPKH TTLDFLGLGM AAGGTAGGGL SALITSIGGG LDVTAAFGNG
501: DFSGKDIGGS S
Best Arabidopsis Sequence Match ( AT5G66730.1 )
(BLAST)
001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
Arabidopsis Description
IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.