CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61193	Soybean	nucleus	90.83	90.06
KRH67268	Soybean	nucleus	32.84	59.0
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	48.83	46.17
KRG89168	Soybean	nucleus, plastid	32.62	43.97
KRH76829	Soybean	nucleus	47.55	43.13
Solyc04g080130.2.1	Tomato	nucleus	46.06	43.11
PGSC0003DMT400013174	Potato	nucleus	45.84	42.49
KRH15560	Soybean	nucleus	36.67	42.16
KRH08298	Soybean	nucleus	45.84	42.07
KRH47108	Soybean	nucleus	43.92	41.37
KRH69941	Soybean	nucleus, plastid	46.06	41.14
KRH69942	Soybean	nucleus	46.06	41.14
KRH23306	Soybean	nucleus	41.79	40.83
KRH05443	Soybean	nucleus	37.95	40.45
KRG95590	Soybean	nucleus	39.45	40.22
KRH71370	Soybean	nucleus	39.02	39.96
KRH10015	Soybean	nucleus	40.3	39.79
KRH32064	Soybean	nucleus	39.23	39.74
KRH25657	Soybean	nucleus	39.45	39.28
KRH49655	Soybean	nucleus	30.28	39.23
KRH22332	Soybean	nucleus	39.23	38.82
KRH44134	Soybean	nucleus	43.71	38.68
KRH55868	Soybean	nucleus	39.02	38.61
KRH26995	Soybean	nucleus	39.45	38.54
KRH68532	Soybean	nucleus	39.66	36.33
KRH71547	Soybean	nucleus	33.48	36.09
KRH68150	Soybean	nucleus	34.75	35.98
KRG96824	Soybean	nucleus	38.81	35.9
KRH19850	Soybean	nucleus	40.09	35.81
KRG90705	Soybean	nucleus	43.28	35.8
KRG95964	Soybean	nucleus	38.59	35.49
KRH36039	Soybean	nucleus	43.07	35.38
KRG92880	Soybean	nucleus	39.87	35.35
KRH32442	Soybean	nucleus	40.09	35.34
KRH67672	Soybean	nucleus	38.59	35.21
KRG96409	Soybean	nucleus	39.87	34.95
KRH33908	Soybean	nucleus, plastid	39.66	34.83
KRH49489	Soybean	nucleus, plastid	39.02	34.33
KRH49485	Soybean	nucleus	39.23	33.89
KRG89167	Soybean	nucleus, plastid	39.45	33.7
KRH24905	Soybean	nucleus	38.59	33.46
KRH41885	Soybean	nucleus	26.87	33.16
KRG91985	Soybean	nucleus	39.23	32.86
KRH34792	Soybean	nucleus	38.38	32.43
KRH26399	Soybean	nucleus	34.54	32.4
KRG89014	Soybean	nucleus	39.45	32.23
KRH22919	Soybean	nucleus	34.54	31.83
KRH60588	Soybean	nucleus	27.08	31.75
KRH58582	Soybean	nucleus	26.65	28.41
KRH38986	Soybean	nucleus	28.14	27.85
KRH42485	Soybean	nucleus	26.44	27.43
KRH48724	Soybean	nucleus	27.72	26.92

Protein Annotations

EntrezGene:100818095	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02003395	EnsemblPlantsGene:GLYMA_06G033300	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:K7KSV3	EnsemblPlants:KRH51873	ProteinID:KRH51873
ProteinID:KRH51873.1	PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF100
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002339A68	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:2575020..2578271

Molecular Weight (calculated)

50065.1 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.495

Length

469 amino acids

Sequence
(BLAST)

001: MTEPQNPSPL THSPALEIAP QTQPLPPPKK KRNLPGMPDP DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRG SKEPQKKAYV
101: CPEPSCVHHN PARALGDLTG IKKHFCRKHG EKKWQCERCS KKYAVHSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA FCDVLAQESA RAQDQAQGGS
201: SNSYVVVVSS SPPTPPLTPS ASVVSPTLSI QSSEIPENPS TKVSPTSPNA SCFVTSSSST PSSTTSVFAS VLAPSTTPTT PSQSPSNSTC SFSNLMSNLA
301: RSENSNALMR EPTSLSLSTP PYHSNNDPLH YTALPQPALS ATALLQKAAQ MGASNASLLR GLGLARTSSS FGKDEGVNIN ATTTLQWNGQ VKQENHPVVD
401: NLGLGLPCGS GSVPDVMMGP TTPFVGQPMT RDLLGLSVGG GATSRGGLSA LLTSFGGNFD SPSEGGVHR

Best Arabidopsis Sequence Match ( AT3G50700.1 )
(BLAST)

001: MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS

Arabidopsis Description

IDD2Protein indeterminate-domain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.