CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19850	Soybean	nucleus	91.17	92.38
KRG95964	Soybean	nucleus	66.17	69.02
KRH67672	Soybean	nucleus	66.35	68.68
VIT_08s0040g02100.t01	Wine grape	nucleus	56.58	61.18
KRH67268	Soybean	nucleus	28.95	59.0
PGSC0003DMT400004390	Potato	nucleus	47.18	55.04
Solyc09g007550.2.1	Tomato	nucleus, plastid	47.37	54.9
KRG89168	Soybean	nucleus, plastid	30.83	47.13
KRH15560	Soybean	nucleus	33.27	43.38
PGSC0003DMT400027159	Potato	nucleus	39.29	42.48
Solyc10g084180.1.1	Tomato	nucleus	39.29	42.39
KRH25657	Soybean	nucleus	36.28	40.98
KRH71370	Soybean	nucleus	35.15	40.83
KRH32064	Soybean	nucleus	35.53	40.82
KRH22332	Soybean	nucleus	36.09	40.51
KRH55868	Soybean	nucleus	36.09	40.51
KRH05443	Soybean	nucleus	33.46	40.45
KRH49655	Soybean	nucleus	27.44	40.33
KRG95590	Soybean	nucleus	34.77	40.22
Solyc06g075250.2.1	Tomato	nucleus, plastid	39.85	40.15
KRH51873	Soybean	nucleus	35.34	40.09
KRH10015	Soybean	nucleus	35.71	40.0
KRH76829	Soybean	nucleus	38.72	39.85
PGSC0003DMT400008694	Potato	nucleus, plastid	39.47	39.77
KRH47108	Soybean	nucleus	36.65	39.16
KRH23306	Soybean	nucleus	35.15	38.96
KRH61193	Soybean	nucleus	34.59	38.9
KRH26995	Soybean	nucleus	34.96	38.75
KRH71547	Soybean	nucleus	31.58	38.62
KRH08298	Soybean	nucleus	36.47	37.96
KRH49489	Soybean	nucleus, plastid	37.78	37.71
KRH44134	Soybean	nucleus	37.22	37.36
KRH69941	Soybean	nucleus, plastid	36.84	37.33
KRH69942	Soybean	nucleus	36.84	37.33
KRG96409	Soybean	nucleus	37.22	37.01
KRH68150	Soybean	nucleus	31.39	36.87
KRH24905	Soybean	nucleus	37.22	36.6
KRG89167	Soybean	nucleus, plastid	36.84	35.7
KRG96824	Soybean	nucleus	33.83	35.5
KRH49485	Soybean	nucleus	35.9	35.17
KRH34792	Soybean	nucleus	36.65	35.14
KRG90705	Soybean	nucleus	37.41	35.1
KRH36039	Soybean	nucleus	37.41	34.85
KRG89014	Soybean	nucleus	37.59	34.84
KRH33908	Soybean	nucleus, plastid	34.96	34.83
KRH26399	Soybean	nucleus	32.71	34.8
KRG92880	Soybean	nucleus	34.59	34.78
KRH68532	Soybean	nucleus	33.46	34.77
KRG91985	Soybean	nucleus	36.47	34.64
KRH22919	Soybean	nucleus	31.77	33.2
KRH41885	Soybean	nucleus	21.43	30.0
KRH60588	Soybean	nucleus	21.62	28.75
KRH58582	Soybean	nucleus	21.8	26.36
KRH38986	Soybean	nucleus	23.12	25.95
KRH42485	Soybean	nucleus	21.8	25.66
KRH48724	Soybean	nucleus	22.74	25.05

Protein Annotations

EntrezGene:100811274	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02006117	EnsemblPlantsGene:GLYMA_10G051500	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	UniProt:I1L8U2	InterPro:IPR013087	InterPro:JKD-like
ProteinID:KRH32440.1	ProteinID:KRH32441.1	EnsemblPlants:KRH32442	ProteinID:KRH32442	ProteinID:KRH32442.1	ProteinID:KRH32443.1
PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF42	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000233CB07	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:4622397..4626006

Molecular Weight (calculated)

57450.4 Da

IEP (calculated)

9.766

GRAVY (calculated)

-0.660

Length

532 amino acids

Sequence
(BLAST)

001: MQMMPADPFS LSTSIGGFTQ DQQNTNPNPK PNAPPKKKRN LPGTPDPDAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSNKE
101: VRKKVYICPE QTCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGTREYKC DCGTLFSRKD SFITHRAFCD ALAEESARLT
201: AVTTTTLNFK SEEGANNVMN SQQHGLGGHG LIGAQQSLQN VSGIPKFGPH SFRLDFNGME QQQRPSLSLW LNQGNPQMNH NNNNINSSNS TSNVGPNYMS
301: ACSSSGLPEI VQMAQANAMM GSSSMVSNFG VHHAGSNNSS SANLSLGKRG EAGGSTVVDM ASIYNNSEGQ NKNSKPASPM SATALLQKAA QMGSTRSTNP
401: SIFSGSFGVI NSPSSQTTSL NNNNNNGDAA MMLGSNTTTT TTVAANANDH FSSLTHSSNS FDQLVMQVNG QLQSEPVKLK LHSNAVENNL TRDFLGVSGG
501: GGGGGPQYLS QELAKFASIN SPMGLIQFTS NQ

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.