CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89014	Soybean	nucleus	90.02	84.84
KRH67268	Soybean	nucleus	27.54	57.09
KRH22919	Soybean	nucleus	52.31	55.6
KRH26399	Soybean	nucleus	51.2	55.4
KRG89168	Soybean	nucleus, plastid	29.39	45.69
Solyc11g069240.1.1	Tomato	nucleus	35.49	42.76
KRH10015	Soybean	nucleus	36.41	41.47
KRH15560	Soybean	nucleus	31.24	41.42
KRH47108	Soybean	nucleus	38.08	41.37
PGSC0003DMT400020945	Potato	nucleus	38.08	41.12
VIT_06s0004g03070.t01	Wine grape	nucleus	37.71	40.88
KRH23306	Soybean	nucleus	36.23	40.83
KRH55868	Soybean	nucleus	35.12	40.08
KRH49655	Soybean	nucleus	26.8	40.06
KRH05443	Soybean	nucleus	32.35	39.77
KRH25657	Soybean	nucleus	34.57	39.7
KRG95590	Soybean	nucleus	33.27	39.13
KRH44134	Soybean	nucleus	38.08	38.87
KRH22332	Soybean	nucleus	34.01	38.82
KRH51873	Soybean	nucleus	33.46	38.59
KRH32064	Soybean	nucleus	32.9	38.44
KRH61193	Soybean	nucleus	33.46	38.27
KRH71370	Soybean	nucleus	32.16	37.99
KRH26995	Soybean	nucleus	33.46	37.71
KRG95964	Soybean	nucleus	35.49	37.65
KRH19850	Soybean	nucleus	36.23	37.33
KRH76829	Soybean	nucleus	35.67	37.33
KRH32442	Soybean	nucleus	36.6	37.22
KRH67672	Soybean	nucleus	35.3	37.16
KRH08298	Soybean	nucleus	34.38	36.4
KRH69941	Soybean	nucleus, plastid	34.94	36.0
KRH69942	Soybean	nucleus	34.94	36.0
KRH49485	Soybean	nucleus	35.86	35.73
KRH71547	Soybean	nucleus	28.65	35.63
KRH49489	Soybean	nucleus, plastid	34.94	35.46
KRG96824	Soybean	nucleus	32.72	34.91
KRH68150	Soybean	nucleus	29.21	34.88
KRG89167	Soybean	nucleus, plastid	35.12	34.61
KRH68532	Soybean	nucleus	32.72	34.57
KRG92880	Soybean	nucleus	33.64	34.4
KRG91985	Soybean	nucleus	35.49	34.29
KRH33908	Soybean	nucleus, plastid	33.83	34.27
KRH34792	Soybean	nucleus	35.12	34.23
KRG90705	Soybean	nucleus	35.67	34.04
KRG96409	Soybean	nucleus	33.09	33.46
KRH36039	Soybean	nucleus	35.12	33.27
KRH41885	Soybean	nucleus	20.52	29.21
KRH60588	Soybean	nucleus	21.07	28.5
KRH58582	Soybean	nucleus	22.0	27.05
KRH42485	Soybean	nucleus	21.63	25.89
KRH38986	Soybean	nucleus	22.0	25.11
KRH48724	Soybean	nucleus	21.81	24.43

Protein Annotations

EntrezGene:100781896	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02007190	EnsemblPlantsGene:GLYMA_12G070300	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:JKD-like	UniProt:K7LTF8	EnsemblPlants:KRH24905
ProteinID:KRH24905	ProteinID:KRH24905.1	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF42
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000296B4A6	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:5138721..5141539

Molecular Weight (calculated)

60203.4 Da

IEP (calculated)

8.285

GRAVY (calculated)

-0.723

Length

541 amino acids

Sequence
(BLAST)

001: MMSEETFSVP PNSTIRATSL VHHVHVQPPS PNPNSNPAKR RRSLPGTPDP DAEVVALSPK SLMATNRFLC EVCNKGFQRD QNLQLHRRGH NLPWKLKKRT
101: NNDQVRKKVY VCPEKSCVHH DPSRALGDLT GIKKHYSRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR EYKCDCGTLF SRKDSFITHR AFCDALAEES
201: ARVTTIPAAL SNLRSDHHHH LTNAQASRIP QIFSGFHSSD QFGGGSSEAL LANHHHQQKL RLPLWLDHHQ VNNTQVLHHT LDNFSTEPSA FTSGTNSVPH
301: DLVQTMDMFG PQTQFVNYRY PEASFGGGNA NLSVLPPHGL KQEQEENKQH LSHSGASSNN LYLSNSIQNP PHHHYMSATT LLQKAVQMGS TRISDNVFGS
401: IVGTTNRNNN NDNNTNLEVQ KLNELVSMEA GCNNNLGGGG DGYLLYDSFG VVNGTDKGLE HMVMPVDEET QQESIVGNSL CSNNKNQLGL TRDFLGVGDN
501: NNNLNPIRRP FFQQDLVEFN AMGSASASVM NLQSQYGGHY C

Best Arabidopsis Sequence Match ( AT3G45260.2 )
(BLAST)

001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ

Arabidopsis Description

IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.