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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH47108 Soybean nucleus 89.06 94.78
KRH23306 Soybean nucleus 61.32 67.71
KRH10015 Soybean nucleus 60.0 66.95
KRH67268 Soybean nucleus 31.13 63.22
VIT_09s0002g02300.t01 Wine grape nucleus 63.02 62.78
CDY70142 Canola nucleus 20.19 58.79
Solyc03g121660.2.1 Tomato nucleus 59.43 58.12
PGSC0003DMT400006385 Potato nucleus 59.06 57.86
KRG89168 Soybean nucleus, plastid 31.13 47.41
KRH15560 Soybean nucleus 35.85 46.57
TraesCS3D01G107300.1 Wheat nucleus 42.08 45.7
TraesCS3A01G105100.1 Wheat nucleus 42.26 45.16
TraesCS3B01G123600.1 Wheat nucleus 42.26 45.07
Zm00001d008842_P001 Maize nucleus 39.62 44.97
KRH05443 Soybean nucleus 37.17 44.77
Solyc06g062670.2.1 Tomato nucleus 42.26 44.53
PGSC0003DMT400012504 Potato nucleus 41.89 44.22
Bra030886.1-P Field mustard nucleus 36.23 43.94
KRH51873 Soybean nucleus 38.68 43.71
KRH71370 Soybean nucleus 37.55 43.45
EES02307 Sorghum nucleus 40.75 43.37
Os01t0195000-01 Rice nucleus 39.81 43.33
KRG95590 Soybean nucleus 37.55 43.26
Zm00001d039467_P001 Maize nucleus 40.38 43.06
KRH32064 Soybean nucleus 37.55 42.98
KRH61193 Soybean nucleus 37.92 42.49
KRH49655 Soybean nucleus 28.87 42.27
KRH25657 Soybean nucleus 37.17 41.83
KRH22332 Soybean nucleus 37.36 41.77
AT1G55110.2 Thale cress nucleus 35.85 41.76
KRH55868 Soybean nucleus 36.79 41.14
KRH26995 Soybean nucleus 36.98 40.83
KRH76829 Soybean nucleus 39.62 40.62
KRH08298 Soybean nucleus 37.92 39.33
KRH33908 Soybean nucleus, plastid 39.43 39.14
KRG92880 Soybean nucleus 39.06 39.13
KRH69941 Soybean nucleus, plastid 38.3 38.67
KRH69942 Soybean nucleus 38.3 38.67
KRG96824 Soybean nucleus 36.98 38.66
KRG90705 Soybean nucleus 41.13 38.45
KRH67672 Soybean nucleus 36.98 38.13
KRH24905 Soybean nucleus 38.87 38.08
KRG95964 Soybean nucleus 36.42 37.84
KRH19850 Soybean nucleus 37.36 37.71
KRH36039 Soybean nucleus 40.57 37.65
KRH32442 Soybean nucleus 37.36 37.22
KRH68532 Soybean nucleus 35.85 37.11
KRH49489 Soybean nucleus, plastid 36.79 36.59
KRH26399 Soybean nucleus 34.34 36.4
KRH49485 Soybean nucleus 36.98 36.1
KRG89014 Soybean nucleus 39.06 36.06
KRH68150 Soybean nucleus 30.75 35.98
KRH22919 Soybean nucleus 34.53 35.95
KRG89167 Soybean nucleus, plastid 36.79 35.52
KRH71547 Soybean nucleus 29.06 35.4
KRG96409 Soybean nucleus 34.91 34.58
KRG91985 Soybean nucleus 36.42 34.46
KRH34792 Soybean nucleus 36.04 34.41
KRH41885 Soybean nucleus 23.02 32.11
CDY70938 Canola cytosol, nucleus 16.04 31.14
KRH60588 Soybean nucleus 23.4 31.0
KRH58582 Soybean nucleus 23.77 28.64
KRH38986 Soybean nucleus 25.47 28.48
KRH42485 Soybean nucleus 23.77 27.88
KRH48724 Soybean nucleus 24.91 27.33
Protein Annotations
EntrezGene:100808344MapMan:15.5.15Gene3D:3.30.160.60EMBL:ACUP02004908EnsemblPlantsGene:GLYMA_08G192300GO:GO:0003674
GO:GO:0003676GO:GO:0005488GO:GO:0046872InterPro:IPR013087UniProt:K7L7L4EnsemblPlants:KRH44134
ProteinID:KRH44134ProteinID:KRH44134.1PFAM:PF12171ScanProsite:PS00028PFscan:PS50157PANTHER:PTHR10593
PANTHER:PTHR10593:SF49SMART:SM00355SUPFAM:SSF57667UniParc:UPI000295FD09InterPro:Znf_C2H2_jazInterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_typeSEG:seg::::
Description
hypothetical protein
Coordinates
chr8:+:15469206..15472220
Molecular Weight (calculated)
58113.0 Da
IEP (calculated)
8.908
GRAVY (calculated)
-0.691
Length
530 amino acids
Sequence
(BLAST)
001: MEMKGFMFHH QQQQQVVVEE NMSNLTSASG EASAASSGNR TEIGTSYMAP PPSQTQQSKK KRNLPGNPDP DAEVIALSPK SLLATNRFIC EICNKGFQRD
101: QNLQLHRRGH NLPWKLKQRT SKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS
201: RRDSFITHRA FCDALAEESA RAITNPLLPP QQQQQQPSSS SHHQMSTLQT QFNPQNNLHA FPLKKEQQSF NVRTEMPPWL GPPAATVVVD HHHHHLSSSS
301: SSIMFSPPHQ ENPNPNPSLG PTLAAYKTVA NPPHMSATAL LQKAAQMGAT MSRSGSSPAM TGPHHHAHVS YSADSASAHF GLNLSSREDT TTSTTTTTTT
401: KTATVFSHGL LSSPLGNKAG AAVSSSAPSL LHDVINSFSV SPSAFEGTPF EDAFIQSSKK LDDDDHHNLY LHDTFSKTSS STGAAGNINE GLTRDFLGLR
501: PLSHTDILTI AGIGNCIHDH QNQSQKPWQG
Best Arabidopsis Sequence Match ( AT1G55110.1 )
(BLAST)
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.