CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95964
KRH00551
KRH04424
KRH22332
KRH26995
KRH28353
KRH40615
KRH58109
KRH67672
KRH77129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	KRH22332	AT1G03840.1	17785527
AT5G03150.1	KRH26995	AT1G03840.1	17785527
AT5G03150.1	KRH00551	AT3G54220.1	17785527
AT5G03150.1	KRH40615	AT3G54220.1	17785527
AT5G03150.1	KRH04424	AT4G37650.1	17785527
AT5G03150.1	KRH28353	AT4G37650.1	17785527
AT5G03150.1	KRH58109	AT4G37650.1	17785527
AT5G03150.1	KRH77129	AT4G37650.1	17785527
AT5G03150.1	KRG95964	AT5G03150.1	17785527
AT5G03150.1	KRH67672	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67672	Soybean	nucleus	91.96	91.25
KRH19850	Soybean	nucleus	70.2	68.19
KRH32442	Soybean	nucleus	69.02	66.17
KRH67268	Soybean	nucleus	29.61	57.85
PGSC0003DMT400004390	Potato	nucleus	48.82	54.61
Solyc09g007550.2.1	Tomato	nucleus, plastid	48.24	53.59
AT5G03150.1	Thale cress	nucleus	50.78	51.49
CDY11241	Canola	nucleus	50.59	51.29
Bra005741.1-P	Field mustard	nucleus	50.59	51.19
CDX80854	Canola	nucleus	50.59	51.09
CDY44344	Canola	nucleus	49.8	50.8
CDY10404	Canola	nucleus	50.39	50.69
Bra009549.1-P	Field mustard	nucleus	50.98	50.39
CDX70328	Canola	nucleus	50.0	49.61
KRG89168	Soybean	nucleus, plastid	31.18	45.69
Solyc10g084180.1.1	Tomato	nucleus	42.16	43.61
PGSC0003DMT400027159	Potato	nucleus	41.96	43.5
KRH15560	Soybean	nucleus	33.73	42.16
GSMUA_Achr7P22720_001	Banana	mitochondrion	22.75	41.28
KRH25657	Soybean	nucleus	37.45	40.55
KRH32064	Soybean	nucleus	36.47	40.17
KRH10015	Soybean	nucleus	37.06	39.79
KRH49655	Soybean	nucleus	28.24	39.78
KRH71370	Soybean	nucleus	35.69	39.74
KRH55868	Soybean	nucleus	36.86	39.66
KRH05443	Soybean	nucleus	33.92	39.32
KRH22332	Soybean	nucleus	36.47	39.24
KRH23306	Soybean	nucleus	36.86	39.17
KRG95590	Soybean	nucleus	35.1	38.91
KRH51873	Soybean	nucleus	35.49	38.59
KRH47108	Soybean	nucleus	37.65	38.55
Solyc06g075250.2.1	Tomato	nucleus, plastid	39.61	38.26
PGSC0003DMT400008694	Potato	nucleus, plastid	39.61	38.26
KRH26995	Soybean	nucleus	35.88	38.12
KRG96409	Soybean	nucleus	39.8	37.94
KRH71547	Soybean	nucleus	32.16	37.7
KRH76829	Soybean	nucleus	37.84	37.33
KRH61193	Soybean	nucleus	34.51	37.21
KRH68150	Soybean	nucleus	32.94	37.09
KRH49489	Soybean	nucleus, plastid	38.24	36.59
KRH44134	Soybean	nucleus	37.84	36.42
KRH08298	Soybean	nucleus	36.27	36.2
KRH24905	Soybean	nucleus	37.65	35.49
KRH69941	Soybean	nucleus, plastid	36.47	35.43
KRH69942	Soybean	nucleus	36.47	35.43
KRH49485	Soybean	nucleus	37.06	34.81
KRG89167	Soybean	nucleus, plastid	37.45	34.79
KRH26399	Soybean	nucleus	33.92	34.6
KRG90705	Soybean	nucleus	38.43	34.57
KRH36039	Soybean	nucleus	38.63	34.5
KRH34792	Soybean	nucleus	37.45	34.41
KRG89014	Soybean	nucleus	38.63	34.32
KRH33908	Soybean	nucleus, plastid	35.69	34.08
KRG92880	Soybean	nucleus	35.1	33.84
KRG96824	Soybean	nucleus	33.53	33.73
KRH68532	Soybean	nucleus	33.73	33.59
KRH22919	Soybean	nucleus	33.33	33.4
KRG91985	Soybean	nucleus	36.47	33.21
KRH41885	Soybean	nucleus	21.96	29.47
KRH60588	Soybean	nucleus	21.96	28.0
KRH58582	Soybean	nucleus	22.35	25.91
KRH38986	Soybean	nucleus	23.73	25.53
KRH42485	Soybean	nucleus	22.55	25.44
KRH48724	Soybean	nucleus	23.73	25.05

Protein Annotations

EntrezGene:100789331	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02012141	EnsemblPlantsGene:GLYMA_19G180400	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:JKD-like	UniProt:K7MZ05
EnsemblPlants:KRG95964	ProteinID:KRG95964	ProteinID:KRG95964.1	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR10593	PANTHER:PTHR10593:SF42	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00023DDE23	InterPro:Znf_C2H2_jaz
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:43924146..43926930

Molecular Weight (calculated)

55325.8 Da

IEP (calculated)

9.448

GRAVY (calculated)

-0.650

Length

510 amino acids

Sequence
(BLAST)

001: MQMIPGDPFS LSTSLPGLPN NEQNTNTNPN PNTPPPNKKK RNLPGTPDPD AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSN
101: KDIRKKVYIC PEKTCVHHDA ARALGDLTGI KKHYSRKHGE KKWKCEKCSK KYAVQSDWKA HTKTCGTREY KCDCGTLFSR KDSFITHRAF CDALAEESSR
201: LTSVASTSLN FMSEDTTMMN TQASLSSSGL INGQGMQSVS HFGPHGLRLM SMGTDQQRPN LSLWLNQGNH HINNPLDVAS SSSSGLPEVL HMAQPNNNAL
301: IGSSTMFSNF GITPASSNSS NPNLSLMGKK GEGGASDLAS MYSESQNKNS NSATPMSATA LLQKAAQMGS TRSTNPSIFS GSFGVMSSSS TQSTSLNSNS
401: NQSSDQLNHA FQNFNATSSS ATLLGSSTNF SSLTHSSNGF DQFLMENNVE PTQLKLHPGS NIMEQHNLTR DFLGVSGNGG GHHAFLPQEL AKFASLGSSM
501: GLNQFTAGHQ

Best Arabidopsis Sequence Match ( AT2G02080.1 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.