Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005741.1-P | Field mustard | nucleus | 99.8 | 99.6 |
| CDX80854 | Canola | nucleus | 97.81 | 97.43 |
| AT5G03150.1 | Thale cress | nucleus | 89.26 | 89.26 |
| CDY10404 | Canola | nucleus | 88.27 | 87.57 |
| CDX70328 | Canola | nucleus | 89.46 | 87.55 |
| CDY44344 | Canola | nucleus | 86.28 | 86.8 |
| CDY09390 | Canola | nucleus | 19.48 | 82.35 |
| CDY04118 | Canola | nucleus | 19.48 | 82.35 |
| CDY14910 | Canola | nucleus | 18.69 | 70.68 |
| CDY37489 | Canola | nucleus | 25.65 | 70.11 |
| CDY72283 | Canola | nucleus | 25.25 | 67.2 |
| CDY53540 | Canola | nucleus | 24.85 | 64.43 |
| CDY04117 | Canola | nucleus | 25.84 | 60.75 |
| CDY70142 | Canola | nucleus | 20.68 | 57.14 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 52.88 | 54.06 |
| KRH67672 | Soybean | nucleus | 52.29 | 51.17 |
| KRG95964 | Soybean | nucleus | 51.29 | 50.59 |
| PGSC0003DMT400004390 | Potato | nucleus | 42.94 | 47.37 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 42.74 | 46.84 |
| CDX97281 | Canola | nucleus, plastid | 33.2 | 43.38 |
| CDX96046 | Canola | nucleus | 19.48 | 42.06 |
| CDX77936 | Canola | nucleus | 35.98 | 41.51 |
| CDY24490 | Canola | nucleus | 35.79 | 41.38 |
| CDX75732 | Canola | nucleus | 36.38 | 41.31 |
| CDX91304 | Canola | nucleus, plastid | 33.0 | 41.09 |
| CDY59418 | Canola | nucleus | 33.6 | 40.92 |
| GSMUA_Achr7P22720_001 | Banana | mitochondrion | 22.66 | 40.57 |
| CDX82515 | Canola | nucleus | 35.39 | 40.36 |
| CDX89862 | Canola | nucleus | 38.37 | 40.21 |
| CDY18188 | Canola | nucleus | 38.17 | 40.08 |
| CDX86010 | Canola | nucleus | 35.19 | 39.51 |
| CDY53836 | Canola | nucleus | 35.39 | 39.29 |
| CDX97521 | Canola | nucleus | 37.77 | 39.18 |
| CDY67009 | Canola | nucleus | 36.98 | 39.08 |
| Solyc10g084180.1.1 | Tomato | nucleus | 38.17 | 38.95 |
| CDY55238 | Canola | nucleus | 37.57 | 38.89 |
| CDY51742 | Canola | nucleus | 37.38 | 38.84 |
| PGSC0003DMT400027159 | Potato | nucleus | 37.97 | 38.82 |
| CDX94759 | Canola | nucleus | 35.79 | 38.79 |
| CDY22307 | Canola | nucleus | 35.79 | 38.79 |
| CDY32514 | Canola | nucleus | 37.77 | 38.78 |
| CDY17440 | Canola | nucleus | 36.38 | 38.28 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 39.36 | 37.5 |
| CDX81653 | Canola | nucleus | 34.79 | 37.47 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 38.97 | 37.12 |
| CDY17614 | Canola | nucleus, plastid | 37.77 | 37.04 |
| CDX81372 | Canola | nucleus | 35.98 | 37.01 |
| CDY15814 | Canola | nucleus | 34.79 | 37.0 |
| CDY57128 | Canola | nucleus | 35.79 | 36.59 |
| CDY03080 | Canola | nucleus, plastid | 37.18 | 36.24 |
| CDY45271 | Canola | nucleus | 29.82 | 36.06 |
| CDY17615 | Canola | nucleus | 37.77 | 36.05 |
| CDY03081 | Canola | nucleus | 37.18 | 35.69 |
| CDY09391 | Canola | nucleus | 38.57 | 34.22 |
| CDY15811 | Canola | nucleus | 38.57 | 34.15 |
| CDY45270 | Canola | nucleus | 30.42 | 34.0 |
| CDY70938 | Canola | cytosol, nucleus | 17.1 | 31.5 |
| CDY51986 | Canola | nucleus | 21.87 | 29.1 |
| CDY36123 | Canola | nucleus | 21.87 | 29.1 |
| CDX84974 | Canola | nucleus | 21.47 | 28.2 |
| CDY60366 | Canola | nucleus | 21.27 | 27.94 |
| CDY04204 | Canola | nucleus | 19.88 | 27.86 |
| CDY04203 | Canola | plastid | 20.48 | 26.75 |
| CDY09400 | Canola | nucleus | 23.06 | 26.48 |
| CDY12268 | Canola | nucleus | 23.26 | 26.23 |
| CDY67587 | Canola | cytosol, nucleus | 11.53 | 25.78 |
| CDY07400 | Canola | nucleus | 21.07 | 25.67 |
| CDY15800 | Canola | nucleus | 22.47 | 25.57 |
| CDY17620 | Canola | nucleus | 22.47 | 25.45 |
| CDY60095 | Canola | nucleus | 22.27 | 25.34 |
| CDY04102 | Canola | nucleus | 22.27 | 24.94 |
| CDY63960 | Canola | nucleus | 22.27 | 24.83 |
| CDY68983 | Canola | nucleus | 18.89 | 24.3 |
Protein Annotations
| EnsemblPlants:CDY11241 | EnsemblPlantsGene:GSBRNA2T00049263001 | Gene3D:3.30.160.60 | GO:A0A078FD26 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:JKD-like | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF42 | PFscan:PS50157 | ProteinID:CDY11241 | ProteinID:CDY11241.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EDAF01 | UniProt:A0A078FD26 | MapMan:15.5.15 | : |
Description
BnaA03g00770DBnaA03g00770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD26]
Coordinates
chrLK032010:+:331428..334009
Molecular Weight (calculated)
55251.6 Da
IEP (calculated)
9.778
GRAVY (calculated)
-0.725
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMIPGDPFS ISSSMGGFVH QEQHIHHLQQ HIPELNPNSN SNPSAKPNSS SAKKKRNQPG NPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNPAISTTT SLNFANDSHV INNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSEMHT QGSSEMVQMA STGNHHLFPL
301: SSSSFLSDFS DHHYNQQFEI PTTSTNPNLT LSSSSTSQQT SASLPSLHQQ HQTLKDSSFS PLFSSSSDKK QNKPLSPMSA TALLQKAAQM GSTRSNSTTV
401: PSLFAGPTMA SSSSAASPPR SSPMTIQQQL NNFNHNLAPP TSGVTTSSVD NNNPFQSNRS GLNPAQQMGL TRDFLGVSNE NHPHQTGRHP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNPAISTTT SLNFANDSHV INNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSEMHT QGSSEMVQMA STGNHHLFPL
301: SSSSFLSDFS DHHYNQQFEI PTTSTNPNLT LSSSSTSQQT SASLPSLHQQ HQTLKDSSFS PLFSSSSDKK QNKPLSPMSA TALLQKAAQM GSTRSNSTTV
401: PSLFAGPTMA SSSSAASPPR SSPMTIQQQL NNFNHNLAPP TSGVTTSSVD NNNPFQSNRS GLNPAQQMGL TRDFLGVSNE NHPHQTGRHP FLPQELARFA
501: PLG
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
Arabidopsis Description
JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.