Factsheet for VIT_08s0040g02100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0129g00030.t01
VIT_08s0040g02100.t01
VIT_08s0056g00050.t01
VIT_12s0028g03030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	VIT_12s0028g03030.t01	AT1G03840.1	17785527
AT5G03150.1	VIT_08s0056g00050.t01	AT3G54220.1	17785527
AT5G03150.1	VIT_07s0129g00030.t01	AT4G37650.1	17785527
AT5G03150.1	VIT_08s0040g02100.t01	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19850	Soybean	nucleus	62.8	58.86
PGSC0003DMT400004390	Potato	nucleus	52.44	56.58
KRH32442	Soybean	nucleus	61.18	56.58
Solyc09g007550.2.1	Tomato	nucleus, plastid	51.83	55.56
AT5G03150.1	Thale cress	nucleus	54.27	53.08
CDY10404	Canola	nucleus	54.67	53.06
CDY11241	Canola	nucleus	54.06	52.88
Bra005741.1-P	Field mustard	nucleus	54.06	52.78
Bra009549.1-P	Field mustard	nucleus	55.28	52.71
CDX80854	Canola	nucleus	54.06	52.67
CDY44344	Canola	nucleus	53.25	52.4
CDX70328	Canola	nucleus	54.47	52.14
VIT_12s0028g03030.t01	Wine grape	nucleus	40.24	46.37
Solyc10g084180.1.1	Tomato	nucleus	42.89	42.8
PGSC0003DMT400027159	Potato	nucleus	42.68	42.68
VIT_06s0004g03070.t01	Wine grape	nucleus	42.68	42.08
GSMUA_Achr7P22720_001	Banana	mitochondrion	23.98	41.99
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	37.2	41.31
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	40.65	40.32
Solyc06g075250.2.1	Tomato	nucleus, plastid	42.68	39.77
PGSC0003DMT400008694	Potato	nucleus, plastid	42.68	39.77
VIT_04s0023g01430.t01	Wine grape	nucleus	40.24	39.13
VIT_09s0002g02300.t01	Wine grape	nucleus	41.67	38.53
VIT_09s0054g01820.t01	Wine grape	nucleus	29.88	37.31
VIT_04s0008g01160.t01	Wine grape	nucleus	39.84	37.26
VIT_01s0010g02100.t01	Wine grape	nucleus	41.87	36.01
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	38.41	35.59
VIT_07s0104g01620.t01	Wine grape	nucleus	40.65	33.44
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	41.26	30.71
VIT_01s0011g06400.t01	Wine grape	nucleus	25.41	29.41
VIT_17s0000g01870.t01	Wine grape	nucleus	24.39	26.37

Protein Annotations

EntrezGene:100243175	wikigene:100243175	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:AM457679	ProteinID:CAN61309
ProteinID:CAN61309.1	ProteinID:CCB57060	ProteinID:CCB57060.1	UniProt:F6HR11	EMBL:FN596008	GO:GO:0003674
GO:GO:0003676	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008356	GO:GO:0009058	GO:GO:0009987	GO:GO:0010075	GO:GO:0030154	GO:GO:0040007
GO:GO:0045604	GO:GO:0046872	GO:GO:0048364	GO:GO:0051302	InterPro:IPR013087	InterPro:JKD-like
EntrezGene:LOC100243175	wikigene:LOC100243175	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF42	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002108B60	ArrayExpress:VIT_08s0040g02100	EnsemblPlantsGene:VIT_08s0040g02100
EnsemblPlants:VIT_08s0040g02100.t01	unigene:Vvi.15345	unigene:Vvi.25483	RefSeq:XP_002275477	RefSeq:XP_002275477.2	RefSeq:XP_002275477.3
RefSeq:XP_010653553.1	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:13208938..13211515

Molecular Weight (calculated)

53207.0 Da

IEP (calculated)

9.476

GRAVY (calculated)

-0.556

Length

492 amino acids

Sequence
(BLAST)

001: MQMMSGDMFS IPSSIRTFAQ DPDANPNNLK PPPKKKRNLP GTPDPDAEVI ALSPKTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVR
101: KKVYICPEKT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF ITHRAFCDAL AEERARITSV
201: AATNLNFRND SMNETVINPQ PGLLNGFSGR GGPDAAGISQ FCPGFGPDLT GLPEMVQVAA SNLFGSSSVG NFGSCNESPW LDKSSATSNG ANLSLASLPH
301: ALKEEEGNKG SMVETLTSLY SGNHSQQSSP AAPMSATALL QKAAQMGSTR SNPSFFGNSF GVMNSSGSHS TTLNTLTHNR NELHQVFGTG KQHENLMATA
401: SLSEGVLAGS GLSSLTSTSN NLAQMMMQTS GKQTEPVPLK LHLGSNSVEN SLTRDFLGMG GGESGRPFLP QELAKFASMG SAMGLSHFTS NH

Best Arabidopsis Sequence Match ( AT5G03150.1 )
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG

Arabidopsis Description

JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.