Factsheet for VIT_01s0010g02090.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	37.97	68.96
KRG89168	Soybean	nucleus, plastid	35.7	67.82
KRH34792	Soybean	nucleus	51.44	61.26
KRG91985	Soybean	nucleus	51.74	61.07
VIT_01s0010g02100.t01	Wine grape	nucleus	52.8	61.01
KRH49485	Soybean	nucleus	50.08	60.96
KRG89167	Soybean	nucleus, plastid	49.77	59.93
GSMUA_Achr9P23870_001	Banana	nucleus	38.73	58.99
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	35.1	58.29
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	42.66	57.55
KRG90705	Soybean	nucleus	49.02	57.14
GSMUA_Achr10P...	Banana	nucleus	41.0	56.58
GSMUA_Achr1P07110_001	Banana	nucleus	41.45	56.38
GSMUA_Achr4P04310_001	Banana	nucleus	39.94	55.81
KRH49489	Soybean	nucleus, plastid	44.93	55.72
KRH36039	Soybean	nucleus	48.11	55.69
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	41.0	55.42
GSMUA_Achr3P13990_001	Banana	nucleus	34.95	54.23
GSMUA_Achr1P02080_001	Banana	nucleus	44.02	53.2
GSMUA_Achr1P17940_001	Banana	nucleus	36.31	51.39
Zm00001d021403_P001	Maize	nucleus	35.25	48.14
Os09t0555700-02	Rice	nucleus	38.88	48.04
TraesCS5B01G358600.1	Wheat	nucleus, plastid	39.64	47.99
TraesCS5A01G356100.1	Wheat	nucleus, plastid	39.49	47.89
TraesCS5D01G364900.1	Wheat	nucleus, plastid	39.33	47.53
OQU89911	Sorghum	nucleus, plastid	38.12	47.28
VIT_12s0028g03030.t01	Wine grape	nucleus	29.8	46.14
GSMUA_Achr11P...	Banana	nucleus	35.85	44.47
GSMUA_Achr4P05240_001	Banana	nucleus	33.59	44.4
KXG25416	Sorghum	nucleus	37.07	44.3
PGSC0003DMT400075837	Potato	nucleus	34.19	43.63
GSMUA_Achr11P...	Banana	nucleus	33.59	43.44
Os08t0554400-02	Rice	nucleus	36.01	43.43
Solyc04g008500.2.1	Tomato	nucleus	33.59	42.94
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	28.14	41.99
VIT_06s0004g03070.t01	Wine grape	nucleus	31.32	41.48
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	31.01	41.33
VIT_04s0023g01430.t01	Wine grape	nucleus	31.62	41.3
VIT_08s0040g02100.t01	Wine grape	nucleus	30.71	41.26
VIT_09s0002g02300.t01	Wine grape	nucleus	32.98	40.98
GSMUA_Achr11P...	Banana	nucleus	34.95	40.81
VIT_04s0008g01160.t01	Wine grape	nucleus	32.38	40.68
Zm00001d017560_P001	Maize	nucleus	35.7	40.55
Zm00001d031992_P001	Maize	nucleus	36.91	40.33
Zm00001d026113_P006	Maize	nucleus	36.46	40.23
EES11271	Sorghum	nucleus	36.46	40.23
TraesCS6D01G235800.1	Wheat	nucleus	35.1	40.14
TraesCS6A01G254500.1	Wheat	nucleus	35.1	40.14
TraesCS6B01G271000.1	Wheat	nucleus	34.95	40.1
TraesCS2B01G421100.1	Wheat	nucleus	36.76	39.71
Os04t0566400-02	Rice	nucleus	36.76	39.64
Os02t0672100-01	Rice	nucleus	36.76	39.51
KXG31026	Sorghum	nucleus	35.4	39.33
VIT_09s0054g01820.t01	Wine grape	nucleus	22.54	37.82
Zm00001d002654_P003	Maize	nucleus	36.16	37.76
KXG36163	Sorghum	nucleus	33.13	37.63
TraesCS2D01G400300.2	Wheat	nucleus	37.37	37.31
TraesCS2A01G403200.2	Wheat	nucleus	37.22	37.1
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	29.8	37.1
Zm00001d006319_P001	Maize	nucleus	31.01	36.67
VIT_07s0104g01620.t01	Wine grape	nucleus	30.41	33.61
VIT_01s0011g06400.t01	Wine grape	nucleus	20.12	31.29
VIT_17s0000g01870.t01	Wine grape	nucleus	19.06	27.69

Protein Annotations

EntrezGene:100257993	wikigene:100257993	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:AM455095	ProteinID:CAN61246
ProteinID:CAN61246.1	ProteinID:CCB51219	ProteinID:CCB51219.1	UniProt:F6HG26	EMBL:FN595754	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR013087	EntrezGene:LOC100257993	wikigene:LOC100257993	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR10593	PANTHER:PTHR10593:SF50	SMART:SM00355	SUPFAM:SSF57667	TIGR:TC61737	TMHMM:TMhelix
UniParc:UPI00021098BC	ArrayExpress:VIT_01s0010g02090	EnsemblPlantsGene:VIT_01s0010g02090	EnsemblPlants:VIT_01s0010g02090.t01	unigene:Vvi.7998	RefSeq:XP_002273614
RefSeq:XP_002273614.1	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:19016111..19020458

Molecular Weight (calculated)

71999.7 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.558

Length

661 amino acids

Sequence
(BLAST)

001: MGGYILGVRA YAYGLIVFFS LHLRIVAVPL DTFLLFLYGL YLKVFRVLEW RFASVEEDHK DRANNCSCIK RLLTMAAPSS SAPFFGTREE EQTQMIQQQS
101: STPTSSTAPT AAAPQKRKRN LPGTPNPDAE VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLRQKTTKE VRRKVYLCPE PTCVHHDPSR
201: ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARNP PSLTNMGGHL YGTSQMTLGL
301: SQVGSQIASL HDQNHPSSNI LRLDSAGAAK YEHLLPPSNP SFGKPPQPMP SSAFYMPDSN QGYQEHQSHH TLLGNKPFHG LMQFPDHQGN ANNSPSAAAN
401: LFNLGFFPNN STSSSISNSN NANNSTTLPP SGFLSPDQFN NGNASGQGTT LFSSSMSDHV GSGLSSLYST SMQQESLAPH MSATALLQKA AQMGPTTSSN
501: SSSLLRGLGG SSSTGAKSDR QLLSSNFSSL RSQMENENHL QGLMNSLANG NSSIFGGSGH AQENNFGGFN GRGITLEQQH KNTNFSKVDD AKLHQSLGVS
601: MGGPDRLTLD FLGVGGVVRN VGGGFSQREQ RHVVEMSSLD SEIKTAAAAQ GSRPFGGSKL Q

Best Arabidopsis Sequence Match ( AT2G02070.1 )
(BLAST)

001: MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP QKKKRNQPRT PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF

Arabidopsis Description

IDD5Protein indeterminate-domain 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.