Factsheet for GSMUA_Achr10P07180_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04118	Canola	nucleus	21.29	85.71
CDY09390	Canola	nucleus	20.88	84.03
GSMUA_Achr1P07110_001	Banana	nucleus	68.48	67.49
CDY53540	Canola	nucleus	26.3	64.95
CDY04117	Canola	nucleus	27.97	62.62
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	61.38	60.12
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	45.09	59.34
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	48.02	57.79
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	55.74	54.49
GSMUA_Achr9P23870_001	Banana	nucleus	48.85	53.92
GSMUA_Achr3P13990_001	Banana	nucleus	45.93	51.64
GSMUA_Achr4P04310_001	Banana	nucleus	50.94	51.59
GSMUA_Achr1P02080_001	Banana	nucleus	57.62	50.46
GSMUA_Achr7P14780_001	Banana	nucleus	36.53	49.02
GSMUA_Achr2P16690_001	Banana	nucleus	37.37	48.64
GSMUA_Achr1P17940_001	Banana	nucleus	46.97	48.18
KRG89168	Soybean	nucleus, plastid	34.86	47.99
GSMUA_Achr2P08460_001	Banana	nucleus	31.52	47.94
GSMUA_Achr3P25410_001	Banana	nucleus	32.57	47.85
GSMUA_Achr5P22140_001	Banana	nucleus	35.91	45.14
KRG91985	Soybean	nucleus	52.61	45.0
GSMUA_Achr7P13540_001	Banana	nucleus	34.24	44.93
GSMUA_Achr7P09150_001	Banana	nucleus	38.0	44.39
GSMUA_Achr6P27030_001	Banana	nucleus	32.78	44.35
KRH34792	Soybean	nucleus	51.36	44.32
GSMUA_Achr2P08910_001	Banana	nucleus	35.49	44.16
GSMUA_Achr9P06650_001	Banana	nucleus	33.82	44.14
VIT_01s0010g02100.t01	Wine grape	nucleus	51.36	43.01
GSMUA_Achr10P...	Banana	nucleus	33.82	42.97
GSMUA_Achr4P05240_001	Banana	nucleus	44.47	42.6
KRH49485	Soybean	nucleus	47.81	42.17
KRG90705	Soybean	nucleus	49.9	42.15
GSMUA_Achr10P...	Banana	nucleus	39.46	42.09
KRH36039	Soybean	nucleus	49.69	41.68
KRG89167	Soybean	nucleus, plastid	47.6	41.53
GSMUA_Achr11P...	Banana	nucleus	43.84	41.1
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	56.58	41.0
GSMUA_Achr11P...	Banana	nucleus	48.23	40.81
GSMUA_Achr7P22720_001	Banana	mitochondrion	23.59	40.21
GSMUA_Achr11P...	Banana	nucleus	44.47	39.96
KRH49489	Soybean	nucleus, plastid	44.47	39.96
CDY45271	Canola	nucleus	34.66	39.9
GSMUA_Achr8P10040_001	Banana	nucleus	36.53	39.15
CDY59418	Canola	nucleus	33.61	38.98
CDY03081	Canola	nucleus	42.59	38.93
CDY17440	Canola	nucleus	38.62	38.7
CDY17615	Canola	nucleus	42.17	38.33
PGSC0003DMT400075837	Potato	nucleus	41.34	38.22
GSMUA_Achr5P06450_001	Banana	nucleus	37.79	38.03
CDY45270	Canola	nucleus	35.7	38.0
Bra026204.1-P	Field mustard	nucleus, plastid	35.49	37.78
Solyc04g008500.2.1	Tomato	nucleus	40.71	37.72
CDY15814	Canola	nucleus	36.33	36.79
CDY17614	Canola	nucleus, plastid	39.25	36.65
Bra024834.1-P	Field mustard	nucleus, plastid	42.17	36.59
Bra024833.1-P	Field mustard	plastid	39.04	36.45
AT2G02080.3	Thale cress	nucleus, plastid	39.25	36.43
Bra026819.1-P	Field mustard	nucleus	35.49	36.4
Bra026203.1-P	Field mustard	nucleus, plastid	35.07	36.21
Bra026616.1-P	Field mustard	nucleus	38.62	36.2
CDX81653	Canola	nucleus	35.28	36.19
CDY03080	Canola	nucleus, plastid	38.83	36.05
GSMUA_Achr11P...	Banana	nucleus	31.11	35.99
CDY09391	Canola	nucleus	42.59	35.98
CDY15811	Canola	nucleus	42.38	35.74
Zm00001d017560_P001	Maize	nucleus	42.59	35.05
AT1G14580.3	Thale cress	nucleus	35.07	34.93
TraesCS2B01G421100.1	Wheat	nucleus	44.47	34.8
Os04t0566400-02	Rice	nucleus	44.47	34.75
EES11271	Sorghum	nucleus	43.42	34.72
Bra040974.1-P	Field mustard	nucleus, plastid	42.38	34.7
TraesCS6A01G254500.1	Wheat	nucleus	41.75	34.6
Bra026617.1-P	Field mustard	nucleus	42.59	34.58
GSMUA_Achr7P24170_001	Banana	nucleus	36.12	34.46
KXG31026	Sorghum	nucleus	42.8	34.45
TraesCS6B01G271000.1	Wheat	nucleus	41.13	34.2
TraesCS6D01G235800.1	Wheat	nucleus	41.13	34.08
Os02t0672100-01	Rice	nucleus	43.22	33.66
AT2G02070.2	Thale cress	nucleus	42.17	33.55
GSMUA_Achr4P14030_001	Banana	nucleus	37.79	33.33
Zm00001d026113_P006	Maize	nucleus	41.54	33.22
GSMUA_Achr4P07200_001	Banana	nucleus	36.95	32.78
Zm00001d002654_P003	Maize	nucleus	43.01	32.54
Bra023223.1-P	Field mustard	plastid	32.57	32.5
TraesCS2D01G400300.2	Wheat	nucleus	44.68	32.33
TraesCS2A01G403200.2	Wheat	nucleus	44.26	31.98
GSMUA_Achr3P29940_001	Banana	nucleus	38.41	31.67
GSMUA_Achr7P18610_001	Banana	nucleus	24.43	30.95
CDY12268	Canola	nucleus	28.81	30.94
GSMUA_Achr10P...	Banana	nucleus	24.63	30.81
GSMUA_Achr7P25960_001	Banana	nucleus	38.0	30.74
GSMUA_Achr6P02490_001	Banana	nucleus	23.59	30.54
CDY68983	Canola	nucleus	24.43	29.92
GSMUA_Achr5P23130_001	Banana	nucleus	23.59	29.74
GSMUA_Achr10P...	Banana	nucleus	23.38	28.07
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	22.34	27.94
GSMUA_Achr3P20220_001	Banana	nucleus	24.43	27.59
GSMUA_AchrUn_...	Banana	nucleus	37.58	20.25

Protein Annotations

EnsemblPlants:GSMUA_Achr10P07180_001	EnsemblPlants:GSMUA_Achr10T07180_001	EnsemblPlantsGene:GSMUA_Achr10G07180_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
PANTHER:PTHR10593	PANTHER:PTHR10593:SF50	PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002968E10	UniProt:M0RG44	MapMan:15.5.15	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G07180_001]

Coordinates

chr10:+:17481041..17483925

Molecular Weight (calculated)

51865.0 Da

IEP (calculated)

9.234

GRAVY (calculated)

-0.558

Length

479 amino acids

Sequence
(BLAST)

001: MAASSSTHFF GTVEQDQYSH QQPLPLPLPL PQASTIPGSS AAAPQKKKRN LPGKPSKYLN IIYTFAYPDA EVIALSPRSL LATNRFVCEV CNKGFQREQN
101: LQLHRRGHNL PWKLKQKNPE EVRRRVYVCP EPTCVHHDPS RALGDLTGVK KHFCRKHGEK RWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRR
201: DSFITHRAFC DALAQERATL PAGINSIGSH FPNHGFNEDP QFASSSSSAA AAAGLFNLGF FSNSGGNTSG TQSGNLLGPD QYINNAGGVT EPTMLITGNL
301: MSNHIDTNMS SLYNPSLHSE EPQMSATALL QKAAQMGATS SGGSRSSLLR GYSGSYSAGA GHASFESPGI HVESENHFQD IMNSLANGNN GVSGGVNQQV
401: SGFSGFIPDS DKMDEGKLHH NLSAGGIGGP DRLTRDFLGV GSLMRSMVRE RHLGMGMSIM DSEKKSGSSN RPFGGGRLP

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.