Factsheet for Bra026616.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09390	Canola	nucleus	23.09	99.16
CDY15814	Canola	nucleus	88.45	95.56
Bra024833.1-P	Field mustard	plastid	81.21	80.9
AT2G02080.3	Thale cress	nucleus, plastid	80.63	79.84
Bra036013.1-P	Field mustard	nucleus	20.94	67.72
Bra026819.1-P	Field mustard	nucleus	57.93	63.38
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	34.25	48.08
KRG89168	Soybean	nucleus, plastid	31.51	46.26
Bra024834.1-P	Field mustard	nucleus, plastid	47.95	44.38
Bra040974.1-P	Field mustard	nucleus, plastid	49.51	43.25
GSMUA_Achr3P13990_001	Banana	nucleus	35.62	42.72
Bra026617.1-P	Field mustard	nucleus	49.32	42.71
Bra018535.1-P	Field mustard	plastid	32.49	41.09
Bra033724.1-P	Field mustard	nucleus	36.99	40.73
GSMUA_Achr1P17940_001	Banana	nucleus	36.99	40.47
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	31.12	39.95
GSMUA_Achr1P07110_001	Banana	nucleus	37.77	39.71
Bra015271.1-P	Field mustard	nucleus	36.79	39.0
Bra036098.1-P	Field mustard	nucleus, plastid	33.27	38.99
Bra030886.1-P	Field mustard	nucleus	33.27	38.9
GSMUA_Achr10P...	Banana	nucleus	36.2	38.62
Bra026204.1-P	Field mustard	nucleus, plastid	33.86	38.44
Bra032541.1-P	Field mustard	nucleus	36.79	38.37
Bra005741.1-P	Field mustard	nucleus	37.38	37.9
GSMUA_Achr9P23870_001	Banana	nucleus	31.9	37.56
Bra033840.1-P	Field mustard	nucleus	33.27	37.53
GSMUA_Achr4P04310_001	Banana	nucleus	34.44	37.21
PGSC0003DMT400075837	Potato	nucleus	37.18	36.68
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	35.03	36.53
Os09t0555700-02	Rice	nucleus	37.96	36.26
Bra009549.1-P	Field mustard	nucleus	36.59	36.24
KRH49485	Soybean	nucleus	38.36	36.1
KRH49489	Soybean	nucleus, plastid	37.57	36.02
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	34.25	35.79
Solyc04g008500.2.1	Tomato	nucleus	36.01	35.59
Bra026203.1-P	Field mustard	nucleus, plastid	32.29	35.56
KRG89167	Soybean	nucleus, plastid	38.16	35.52
Bra027394.1-P	Field mustard	nucleus	35.03	35.45
GSMUA_Achr4P05240_001	Banana	nucleus	34.64	35.4
Bra037151.1-P	Field mustard	nucleus	34.05	35.37
VIT_01s0010g02100.t01	Wine grape	nucleus	39.53	35.31
KRG90705	Soybean	nucleus	39.14	35.27
KRG91985	Soybean	nucleus	38.36	35.0
KRH34792	Soybean	nucleus	37.96	34.95
Bra021510.1-P	Field mustard	nucleus	34.83	34.9
Os08t0554400-02	Rice	nucleus	37.38	34.85
TraesCS5B01G358600.1	Wheat	nucleus, plastid	36.99	34.62
KXG25416	Sorghum	nucleus	37.38	34.54
Zm00001d021403_P001	Maize	nucleus	32.68	34.5
KRH36039	Soybean	nucleus	38.55	34.5
TraesCS5D01G364900.1	Wheat	nucleus, plastid	36.79	34.37
OQU89911	Sorghum	nucleus, plastid	35.81	34.33
TraesCS5A01G356100.1	Wheat	nucleus, plastid	36.59	34.31
GSMUA_Achr1P02080_001	Banana	nucleus	36.59	34.19
GSMUA_Achr11P...	Banana	nucleus	34.05	34.05
GSMUA_Achr11P...	Banana	nucleus	35.42	33.96
EES11271	Sorghum	nucleus	39.33	33.56
Bra001523.1-P	Field mustard	nucleus	33.46	33.4
Zm00001d026113_P006	Maize	nucleus	38.94	33.22
TraesCS2B01G421100.1	Wheat	nucleus	39.73	33.17
Zm00001d017560_P001	Maize	nucleus	37.77	33.16
KXG31026	Sorghum	nucleus	38.55	33.11
TraesCS6B01G271000.1	Wheat	nucleus	37.18	32.99
TraesCS6D01G235800.1	Wheat	nucleus	37.18	32.87
TraesCS6A01G254500.1	Wheat	nucleus	37.18	32.87
Os04t0566400-02	Rice	nucleus	38.55	32.14
Os02t0672100-01	Rice	nucleus	38.36	31.87
Bra023223.1-P	Field mustard	plastid	29.75	31.67
Zm00001d002654_P003	Maize	nucleus	38.94	31.44
Zm00001d031992_P001	Maize	nucleus	36.59	30.91
TraesCS2A01G403200.2	Wheat	nucleus	39.92	30.77
TraesCS2D01G400300.2	Wheat	nucleus	39.73	30.66
GSMUA_Achr11P...	Banana	nucleus	33.46	30.21
KXG36163	Sorghum	nucleus	32.88	28.87
Zm00001d006319_P001	Maize	nucleus	31.12	28.44
Bra010981.1-P	Field mustard	nucleus	20.74	28.04
Bra024771.1-P	Field mustard	nucleus	20.35	27.15
Bra004283.1-P	Field mustard	nucleus	21.72	26.94
Bra004050.1-P	Field mustard	nucleus	21.53	26.63
Bra017432.1-P	Field mustard	nucleus	21.72	25.23
Bra026624.1-P	Field mustard	nucleus	21.53	25.11
Bra024841.1-P	Field mustard	nucleus	21.72	25.0
Bra038293.1-P	Field mustard	nucleus	31.51	18.17

Protein Annotations

EnsemblPlants:Bra026616.1	EnsemblPlants:Bra026616.1-P	EnsemblPlantsGene:Bra026616	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66
PFAM:PF00096	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0002546A87	UniProt:M4ECV6	MapMan:15.5.15	:	:	:

Description

AT2G02080 (E=1e-158) AtIDD4 | AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor

Coordinates

chrA02:+:20689531..20697320

Molecular Weight (calculated)

55922.9 Da

IEP (calculated)

9.054

GRAVY (calculated)

-0.664

Length

511 amino acids

Sequence
(BLAST)

001: MSSSSYNASV APSSSSAEPF FLTGSGVGDN EFDRKDTFIS MIQEPNSSAQ PPKKRRNQPG NPILIDKHSG SYWWLNLIDQ TDPDAEVVAL SPKTLMATNR
101: FICDVCKKGF QREQNLQLHR RGHNLPWKLK QKSTKDVKRK VYLCPEPTCV HHDHSRALGD LTGIKKHYYR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG
201: TKEYRCDCGT IFSRRDSYIT HRAFCDALIQ ETARNSTVSF TSMASASSGA VSGGFYRRLD GGNALAHRNL NDHHNSGFST IPGYNLNIAS SENSRDYVQQ
301: TSDPNFLNQI SSSQRVLTVP NNNDQSFMNE HGMIQFDPVN NTNLKSNTNN SFFNLGFFHE NTKNSETSLP SLYSTDVHTR SSNVSATALL QKATQMGSVT
401: SNDPSAFFRG LASSSNSSSV VGNDFGGGQI MGNNNNGSLQ GLVSSLVAVN GGGAGGSGGN IFDVHFGNIE NMSGSDKLTL DFLGVGGLVR NVNRGGGHGD
501: VPEQNHTFGR P

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.