Factsheet for Bra024771.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60366	Canola	nucleus	99.74	99.74
Bra010981.1-P	Field mustard	nucleus	82.51	83.6
AT1G25250.3	Thale cress	nucleus	80.16	79.74
Bra004050.1-P	Field mustard	nucleus	62.92	58.35
Bra004283.1-P	Field mustard	nucleus	62.4	58.01
VIT_01s0011g06400.t01	Wine grape	nucleus	60.05	54.12
Bra036013.1-P	Field mustard	nucleus	21.93	53.16
GSMUA_Achr7P18610_001	Banana	nucleus	52.22	52.91
GSMUA_Achr6P02490_001	Banana	nucleus	49.87	51.62
KRH58582	Soybean	nucleus	59.01	51.36
GSMUA_Achr5P23130_001	Banana	nucleus	50.65	51.05
Bra017432.1-P	Field mustard	nucleus	58.49	50.91
Bra026624.1-P	Field mustard	nucleus	57.7	50.46
GSMUA_Achr10P...	Banana	nucleus	50.13	50.13
KRH42485	Soybean	nucleus	58.75	49.78
Bra024841.1-P	Field mustard	nucleus	56.66	48.87
GSMUA_Achr3P20220_001	Banana	nucleus	54.05	48.82
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	46.21	46.21
GSMUA_Achr10P...	Banana	nucleus	44.65	42.86
Solyc05g054030.2.1	Tomato	nucleus	42.56	42.78
TraesCS4B01G230800.1	Wheat	nucleus, plastid	44.91	42.47
Zm00001d005871_P002	Maize	nucleus	48.56	42.18
TraesCS4A01G074700.1	Wheat	nucleus, plastid	45.17	41.69
TraesCS4D01G232000.1	Wheat	nucleus, plastid	44.91	41.55
Os03t0237250-01	Rice	plastid	47.26	41.32
TraesCS5A01G233700.1	Wheat	nucleus	52.48	40.94
TraesCS5D01G240600.1	Wheat	nucleus	52.48	40.94
TraesCS5B01G232200.1	Wheat	nucleus	52.48	40.85
HORVU4Hr1G064740.2	Barley	nucleus, plastid	45.17	40.71
Zm00001d020683_P001	Maize	nucleus	50.91	39.24
Zm00001d028361_P001	Maize	nucleus, plastid	46.21	39.16
Zm00001d047976_P001	Maize	nucleus, plastid	45.69	39.06
EER96827	Sorghum	nucleus	49.87	38.28
KXG39813	Sorghum	nucleus, plastid	45.43	37.91
Os08t0467100-01	Rice	nucleus	52.48	37.71
Zm00001d031759_P001	Maize	nucleus	50.65	37.45
EES13982	Sorghum	nucleus	51.17	36.57
Bra018535.1-P	Field mustard	plastid	27.94	26.49
Bra036098.1-P	Field mustard	nucleus, plastid	29.77	26.15
Bra033840.1-P	Field mustard	nucleus	29.77	25.17
Bra033724.1-P	Field mustard	nucleus	30.03	24.78
Bra030886.1-P	Field mustard	nucleus	28.2	24.71
Bra032541.1-P	Field mustard	nucleus	30.03	23.47
Bra015271.1-P	Field mustard	nucleus	29.5	23.44
Bra037151.1-P	Field mustard	nucleus	29.5	22.97
Bra027394.1-P	Field mustard	nucleus	28.46	21.58
Bra021510.1-P	Field mustard	nucleus	28.72	21.57
Bra005741.1-P	Field mustard	nucleus	27.94	21.23
Bra026819.1-P	Field mustard	nucleus	25.85	21.2
Bra026204.1-P	Field mustard	nucleus, plastid	24.8	21.11
Bra001523.1-P	Field mustard	nucleus	28.2	21.09
Bra009549.1-P	Field mustard	nucleus	28.2	20.93
Bra024833.1-P	Field mustard	plastid	27.42	20.47
Bra026616.1-P	Field mustard	nucleus	27.15	20.35
Bra026203.1-P	Field mustard	nucleus, plastid	24.02	19.83
Bra023223.1-P	Field mustard	plastid	24.8	19.79
Bra024834.1-P	Field mustard	nucleus, plastid	28.2	19.57
Bra026617.1-P	Field mustard	nucleus	28.72	18.64
Bra040974.1-P	Field mustard	nucleus, plastid	28.46	18.63
Bra038293.1-P	Field mustard	nucleus	29.24	12.64

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra024771	EnsemblPlants:Bra024771.1	EnsemblPlants:Bra024771.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:M4E7L5	PFAM:PF12874
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF43	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI00025426B8	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

AT1G25250 (E=1e-140) AtIDD16 | AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA09:+:22854460..22856550

Molecular Weight (calculated)

43688.1 Da

IEP (calculated)

8.971

GRAVY (calculated)

-0.772

Length

383 amino acids

Sequence
(BLAST)

001: MIDFEKNINH PSSSSSDLLL AINGTTVNNK RKRRPAGTPD PDAEVVSLSP RTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR EKKDEEVRKR
101: VYVCPEPTCL HHNPCHALGD LVGIKKHFRR KHSAHKQWVC DRCSKGYAVQ SDYKAHLKTC GSRGHSCDCG RVFSRVESFI EHQDTCTIRR PQPSNPPRPL
201: KQNTSCHATP SITLSTTSIG PLLHGLPMLR PPQASHQQSL AFAYPLDASS SSYESLQLQL SIGMAKTSSN LKRSEKGEMS LPLERANEEA RRADEMRQEA
301: KRQIEMAEMD FERAKNIREE AKAELEKAQF VREEAMERIK TTILEITCRS CKQLFQLPVM ADESKTSLVM SYVSSARTEG EFE

Best Arabidopsis Sequence Match ( AT1G25250.3 )
(BLAST)

001: MIHYEQNNNL QNLPSSSSND LLLGINGADA THKRKRRPAG TPDPDAEVVS LSPRTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRDKKDEEV
101: RKRVYVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSVHKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE SFIEHQDTCT IRQPQPTNHR
201: HLQQHTMGLD APSRTTSTAS FGPLLHGLPL LRPPRPSNQH SPAFAYPFNA SSAPFESLEL QLSIGMARTS AQARHNEKRE TSLTKERANE EARKAEETRQ
301: EAKRQIEMAE KDFEKAKRIR EEAKTELEKA HVVREEAIKR INATMMEITC HSCKQLFQLP VTADESTSSL VMSYVSSATT EGECE

Arabidopsis Description

AtIDD16IDD16 [Source:UniProtKB/TrEMBL;Acc:A0A178WG74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.