CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031759_P001	Maize	nucleus	89.37	92.47
Os08t0467100-01	Rice	nucleus	70.71	71.11
EER96827	Sorghum	nucleus	64.18	68.94
TraesCS5D01G240600.1	Wheat	nucleus	62.31	68.02
TraesCS5A01G233700.1	Wheat	nucleus	62.31	68.02
TraesCS5B01G232200.1	Wheat	nucleus	61.57	67.07
GSMUA_Achr7P18610_001	Banana	nucleus	44.96	63.76
CDX96046	Canola	nucleus	27.61	63.52
GSMUA_Achr5P23130_001	Banana	nucleus	43.47	61.32
GSMUA_Achr3P20220_001	Banana	nucleus	47.39	59.91
GSMUA_Achr6P02490_001	Banana	nucleus	41.04	59.46
Solyc01g005060.2.1	Tomato	nucleus	36.38	57.52
KRH41885	Soybean	nucleus	40.49	57.11
GSMUA_Achr10P...	Banana	nucleus	40.67	56.92
KRH60588	Soybean	nucleus	42.35	56.75
VIT_01s0011g06400.t01	Wine grape	nucleus	44.4	56.0
PGSC0003DMT400079735	Potato	nucleus, plastid	45.52	55.84
Solyc06g072360.2.1	Tomato	nucleus	39.37	53.83
CDY04204	Canola	nucleus	36.01	53.76
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	38.06	53.26
VIT_17s0000g01870.t01	Wine grape	nucleus	45.15	53.19
CDY36123	Canola	nucleus	37.31	52.91
Bra010981.1-P	Field mustard	nucleus	37.31	52.91
Solyc03g098070.2.1	Tomato	nucleus	35.82	52.75
CDY51986	Canola	nucleus	37.13	52.65
AT1G25250.3	Thale cress	nucleus	37.31	51.95
CDX84974	Canola	nucleus	36.94	51.7
KRH38986	Soybean	nucleus	45.71	51.69
CDY60366	Canola	nucleus	36.75	51.44
PGSC0003DMT400069306	Potato	nucleus	39.37	51.34
Bra024771.1-P	Field mustard	nucleus	36.57	51.17
KRH48724	Soybean	nucleus	46.08	51.14
CDY04203	Canola	plastid	36.57	50.91
Bra004050.1-P	Field mustard	nucleus	39.18	50.85
CDY07400	Canola	nucleus	39.18	50.85
KRH58582	Soybean	nucleus	41.23	50.23
AT1G68130.1	Thale cress	nucleus	38.99	49.88
Bra004283.1-P	Field mustard	nucleus	38.25	49.76
GSMUA_Achr10P...	Banana	nucleus	36.75	49.37
Bra026624.1-P	Field mustard	nucleus	40.11	49.09
Bra017432.1-P	Field mustard	nucleus	39.93	48.64
CDY09400	Canola	nucleus	39.74	48.63
KRH42485	Soybean	nucleus	40.67	48.23
Bra024841.1-P	Field mustard	nucleus	39.93	48.2
CDY17620	Canola	nucleus	39.93	48.2
CDY15800	Canola	nucleus	39.74	48.19
CDY63960	Canola	nucleus	40.3	47.89
AT2G01940.3	Thale cress	nucleus	39.74	47.76
CDY04102	Canola	nucleus	39.93	47.66
CDY60095	Canola	nucleus	38.81	47.06
KXG39813	Sorghum	nucleus, plastid	39.74	46.41
Solyc05g054030.2.1	Tomato	nucleus	30.41	42.78
KXG38489	Sorghum	nucleus	20.9	26.17
EES02157	Sorghum	nucleus	23.32	25.99
EES02307	Sorghum	nucleus	23.88	25.7
EES04172	Sorghum	nucleus	24.25	25.0
EER95332	Sorghum	nucleus	24.44	24.95
EES00944	Sorghum	nucleus	22.39	24.95
EES05153	Sorghum	nucleus	21.64	23.63
KXG25416	Sorghum	nucleus	24.25	23.51
KXG30322	Sorghum	nucleus	20.71	23.37
KXG31026	Sorghum	nucleus	25.19	22.69
OQU89911	Sorghum	nucleus, plastid	22.39	22.51
KXG36163	Sorghum	nucleus	23.88	21.99
EES11271	Sorghum	nucleus	24.44	21.87
EER97442	Sorghum	nucleus	23.69	16.2

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8080658	UniProt:C5YM72	ncoils:Coil	EnsemblPlants:EES13982
ProteinID:EES13982	ProteinID:EES13982.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF54	SMART:SM00355	EnsemblPlantsGene:SORBI_3007G153300
SUPFAM:SSF57667	UniParc:UPI0001A87A64	RefSeq:XP_002444487.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:58604742..58608133

Molecular Weight (calculated)

56783.3 Da

IEP (calculated)

8.544

GRAVY (calculated)

-0.586

Length

536 amino acids

Sequence
(BLAST)

001: MLSSCAPTTA FPPPETGAAP PEPPFRSLQI ATTSAAAGAK KKRRPAGTPD PDAEVVSLSP RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR
101: EAGEAARKRV FVCPEPSCLH HDPSHALGDL VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG TRGHTCDCGR VFSRVESFIE HQDTCNAGRP
201: RAETSSSPAS GGGGGGGGAG FGMAAAGGAS TSQQQRQLHA AAAAAALSRT ASSASPSSGG EFGVSQQQVA CWPAGPAIAS PTAAATFHRF DPALSSPPTP
301: QYERPGGGGG GVHHNLELQL MPPRGSGSYY DAGGTTPAAA VATRCYAFSP HSPAVGLGAD PMRLQLSMGF GGGDNDDDSE TSAPAATAAA RLKEEAREQM
401: RLAMAEKAAA DDARAQARRQ AELAEQELAT ARRMRQQAQA ELGRAHALRD HAVRQVDATL LQVTCYSCRC KFRARAATGT GGAMSSEVAS YVSSVVTEGG
501: DAEVDDDPYR HHHHHRHRQL NADDDAPSHA RMMDIN

Best Arabidopsis Sequence Match ( AT1G68130.1 )
(BLAST)

001: MIDYERSNTT KNINTHHHNP PPSSSSSDLL PDGNGTAVTQ KRKRRPAGTP DPEAEVVSLS PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK
101: RETNEEVRKR VYVCPEPTCL HHNPCHALGD LVGIKKHFRR KHSNHKQWIC ERCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCTVRR
201: SQPSNHRLHE QQQHTTNATQ TASTAENNEN GDLSIGPILP GHPLQRRQSP PSEQQPSTLL YPFVTNGSIE LQLLPSRNCA DETSLSLSIG TMDQKTMSEV
301: EKKSYEKGET SLEREEARRE TKRQIEIAEL EFAEAKRIRQ HARAELHKAH LFREEASRRI SATMMQITCH NCKQHFQAPA ALVPPPPQTH CTDESTSLAV
401: SYMSSATTEG EKASDRASS

Arabidopsis Description

IDD14Protein indeterminate-domain 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.