Factsheet for Solyc06g072360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069306	Potato	nucleus	91.33	87.1
Solyc03g098070.2.1	Tomato	nucleus	57.4	61.81
Solyc01g005060.2.1	Tomato	nucleus	52.81	61.06
KRH41885	Soybean	nucleus	57.4	59.21
KRH60588	Soybean	nucleus	60.2	59.0
VIT_17s0000g01870.t01	Wine grape	nucleus	64.54	55.6
KRH38986	Soybean	nucleus	66.84	55.27
KRH48724	Soybean	nucleus	67.35	54.66
GSMUA_Achr7P18610_001	Banana	nucleus	50.51	52.38
GSMUA_Achr5P23130_001	Banana	nucleus	49.23	50.79
GSMUA_Achr6P02490_001	Banana	nucleus	47.7	50.54
GSMUA_Achr10P...	Banana	nucleus	48.47	49.61
GSMUA_Achr3P20220_001	Banana	nucleus	51.28	47.41
Zm00001d005871_P002	Maize	nucleus	53.32	47.39
GSMUA_Achr10P...	Banana	nucleus	48.21	47.37
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	45.92	47.0
TraesCS4B01G230800.1	Wheat	nucleus, plastid	47.19	45.68
Solyc05g054030.2.1	Tomato	nucleus	43.88	45.14
TraesCS4D01G232000.1	Wheat	nucleus, plastid	47.19	44.69
TraesCS5D01G240600.1	Wheat	nucleus	55.61	44.4
TraesCS4A01G074700.1	Wheat	nucleus, plastid	46.94	44.34
TraesCS5A01G233700.1	Wheat	nucleus	55.36	44.2
TraesCS5B01G232200.1	Wheat	nucleus	55.36	44.11
HORVU4Hr1G064740.2	Barley	nucleus, plastid	47.45	43.76
Os03t0237250-01	Rice	plastid	47.96	42.92
Zm00001d047976_P001	Maize	nucleus, plastid	48.72	42.63
Zm00001d028361_P001	Maize	nucleus, plastid	48.98	42.48
Zm00001d020683_P001	Maize	nucleus	53.83	42.45
EER96827	Sorghum	nucleus	52.81	41.48
KXG39813	Sorghum	nucleus, plastid	48.47	41.39
Zm00001d031759_P001	Maize	nucleus	53.83	40.73
Os08t0467100-01	Rice	nucleus	55.36	40.71
EES13982	Sorghum	nucleus	53.83	39.37
Solyc09g007550.2.1	Tomato	nucleus, plastid	30.1	25.71
Solyc01g099340.2.1	Tomato	nucleus	27.81	25.71
Solyc10g084180.1.1	Tomato	nucleus	31.89	25.36
Solyc08g063040.2.1	Tomato	nucleus	29.08	24.41
Solyc11g069240.1.1	Tomato	nucleus	27.55	24.05
Solyc09g065670.2.1	Tomato	nucleus	28.32	23.62
Solyc06g075250.2.1	Tomato	nucleus, plastid	31.63	23.48
Solyc06g062670.2.1	Tomato	nucleus	30.1	23.46
Solyc04g080130.2.1	Tomato	nucleus	29.59	23.15
Solyc09g074780.2.1	Tomato	nucleus, plastid	30.1	22.69
Solyc03g121660.2.1	Tomato	nucleus	30.87	22.32
Solyc07g053570.2.1	Tomato	nucleus	28.57	22.31
Solyc04g008500.2.1	Tomato	nucleus	29.34	22.24
Solyc02g062940.2.1	Tomato	nucleus	32.14	19.21

Protein Annotations

EnsemblPlants:Solyc06g072360.2.1	EnsemblPlantsGene:Solyc06g072360.2	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil
PANTHER:PTHR10593	PANTHER:PTHR10593:SF43	PFscan:PS50157	ScanProsite:PS00028	ScanProsite:PS01359	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002765793	UniProt:K4C8V6	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr6:-:44634996..44637294

Molecular Weight (calculated)

44828.0 Da

IEP (calculated)

9.041

GRAVY (calculated)

-0.838

Length

392 amino acids

Sequence
(BLAST)

001: MTSSEINENS CINNNNNNKR KRRPAGTPDP DAEVVSLSPK TLLESDRYIC EICNQGFQRD QNLQMHRRRH KVPWKLLKRE TPIVKKRVFV CPEPTCLHHD
101: PCHALGDLVG IKKHFRRKHS NHKQWVCEKC NKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACSFGRLRS ESQSLIQLPS APCLSRTASS
201: PSPSSDHTNN LITTTNTIPW PNFIINTPNA MIKEHNLELQ LLTTTSTTTT SPCSPFDVSI SSKSRDDHNL QLSIGSSDLS ENNNNDTHRW RNDVEGLRHA
301: LAEKVYAEET RKEARREIEL AEEELSNARR IRRQAQMELE KAQVLKEEAI RKINFTLSQI TCYACKQKFQ PKKTTTTTTR TTSIDQNIHL KV

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.