Factsheet for TraesCS4A01G074700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G232000.1	Wheat	nucleus, plastid	97.11	97.34
TraesCS4B01G230800.1	Wheat	nucleus, plastid	94.22	96.54
HORVU4Hr1G064740.2	Barley	nucleus, plastid	95.18	92.94
Os03t0237250-01	Rice	plastid	77.11	73.06
Zm00001d028361_P001	Maize	nucleus, plastid	76.14	69.91
Zm00001d047976_P001	Maize	nucleus, plastid	74.94	69.42
KXG39813	Sorghum	nucleus, plastid	76.63	69.28
CDX96046	Canola	nucleus	32.53	57.94
Solyc01g005060.2.1	Tomato	nucleus	42.65	52.21
KRH60588	Soybean	nucleus	46.02	47.75
KRH41885	Soybean	nucleus	43.61	47.63
Solyc06g072360.2.1	Tomato	nucleus	44.34	46.94
CDX84974	Canola	nucleus	42.41	45.95
Bra010981.1-P	Field mustard	nucleus	41.69	45.77
CDY36123	Canola	nucleus	41.69	45.77
CDY51986	Canola	nucleus	41.45	45.5
CDY60366	Canola	nucleus	41.93	45.43
AT1G25250.3	Thale cress	nucleus	41.93	45.19
Bra024771.1-P	Field mustard	nucleus	41.69	45.17
VIT_01s0011g06400.t01	Wine grape	nucleus	45.78	44.71
CDY04204	Canola	nucleus	38.55	44.57
PGSC0003DMT400069306	Potato	nucleus	44.1	44.53
PGSC0003DMT400079735	Potato	nucleus, plastid	46.27	43.94
KRH58582	Soybean	nucleus	45.54	42.95
CDY04203	Canola	plastid	39.76	42.86
Bra026624.1-P	Field mustard	nucleus	45.06	42.69
CDY07400	Canola	nucleus	42.17	42.37
Bra004050.1-P	Field mustard	nucleus	42.17	42.37
CDY09400	Canola	nucleus	44.58	42.24
KRH38986	Soybean	nucleus	48.19	42.19
Bra004283.1-P	Field mustard	nucleus	41.69	41.99
AT1G68130.1	Thale cress	nucleus	42.17	41.77
CDY17620	Canola	nucleus	44.58	41.67
Bra024841.1-P	Field mustard	nucleus	44.58	41.67
CDY15800	Canola	nucleus	44.34	41.63
VIT_17s0000g01870.t01	Wine grape	nucleus	45.54	41.54
Bra017432.1-P	Field mustard	nucleus	43.86	41.36
KRH48724	Soybean	nucleus	47.95	41.2
CDY63960	Canola	nucleus	44.58	41.02
CDY60095	Canola	nucleus	43.61	40.95
CDY04102	Canola	nucleus	44.1	40.76
TraesCS5A01G233700.1	Wheat	nucleus	48.19	40.73
KRH42485	Soybean	nucleus	44.34	40.71
Solyc03g098070.2.1	Tomato	nucleus	35.66	40.66
AT2G01940.3	Thale cress	nucleus	43.61	40.58
Solyc05g054030.2.1	Tomato	nucleus	37.11	40.42
TraesCS6A01G126000.1	Wheat	nucleus	28.43	28.23
TraesCS3A01G105100.1	Wheat	nucleus	29.64	24.8
TraesCS3A01G205800.1	Wheat	nucleus	28.19	24.53
TraesCS3A01G170700.1	Wheat	nucleus	28.67	24.34
TraesCS4A01G041400.1	Wheat	nucleus	26.99	23.0
TraesCS5A01G356100.1	Wheat	nucleus, plastid	29.4	22.39
TraesCS2A01G289500.1	Wheat	nucleus	26.02	22.36
TraesCS4A01G008900.1	Wheat	nucleus	25.78	22.06
TraesCS6A01G254500.1	Wheat	nucleus	28.43	20.42
TraesCS2A01G403200.2	Wheat	nucleus	28.92	18.1
TraesCS2A01G188400.2	Wheat	nucleus	29.88	14.94

Protein Annotations

EnsemblPlants:TraesCS4A01G074700.1	EnsemblPlantsGene:TraesCS4A01G074700	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593	PANTHER:PTHR10593:SF30
PFAM:PF00096	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
MapMan:15.5.15	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:74009458..74013140

Molecular Weight (calculated)

44066.6 Da

IEP (calculated)

9.976

GRAVY (calculated)

-0.512

Length

415 amino acids

Sequence
(BLAST)

001: MALVKSHHQM LASSSTSSSS PSSQQQPPPP PPPLAPPPPA TDQPSPAKRK RRPPGTPDPD AEVVALTPRT LLESDRYVCE ICGQGFQREQ NLQMHRRRHK
101: VPWRLVKRAP APSAGEDGGA GTAGGAGATT VPRKRVFVCP EPSCLHHDPA HALGDLVGIK KHFRRKHGGR RQWVCARCAK GYAVQSDYKA HLKTCGTRGH
201: SCDCGRVFSR VESFIEHQDA CNSGRMRGEA GAVPSALPVL RPVVIRHPAP GVPSTPPPEL QLLPVATKAP VNATPAVFSA SHEPHATTKL ELSIGPVASL
301: DGVSGADDGR EEMMRAMQEK AAADAERARA REEAAAAERA LEEARRARQR ARGELEKACA LRDHAARLLA HVTCHACRQR SFGMVPMGVA AGGDGGHGGS
401: AVACEALRRG AGLGL

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.