Factsheet for TraesCS3A01G205800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G209800.1	Wheat	nucleus	96.02	96.62
TraesCS3B01G237700.1	Wheat	nucleus	95.6	96.61
HORVU3Hr1G049810.3	Barley	nucleus	92.24	95.44
EES00944	Sorghum	nucleus	57.44	56.96
Zm00001d011223_P002	Maize	nucleus	55.77	56.84
Zm00001d044261_P001	Maize	nucleus	55.56	55.21
Os01t0572300-01	Rice	nucleus	51.78	46.0
TraesCS3A01G105100.1	Wheat	nucleus	41.93	40.32
TraesCS3A01G170700.1	Wheat	nucleus	37.74	36.81
TraesCS4A01G041400.1	Wheat	nucleus	36.48	35.73
TraesCS6A01G126000.1	Wheat	nucleus	31.24	35.65
TraesCS4A01G008900.1	Wheat	nucleus	33.54	32.99
TraesCS2A01G289500.1	Wheat	nucleus	32.7	32.3
TraesCS5A01G356100.1	Wheat	nucleus, plastid	35.01	30.64
TraesCS6A01G254500.1	Wheat	nucleus	36.69	30.28
TraesCS2A01G403200.2	Wheat	nucleus	39.83	28.66
TraesCS4A01G074700.1	Wheat	nucleus, plastid	24.53	28.19
TraesCS5A01G233700.1	Wheat	nucleus	24.32	23.63
TraesCS2A01G188400.2	Wheat	nucleus	33.75	19.4

Protein Annotations

EnsemblPlants:TraesCS3A01G205800.1	EnsemblPlantsGene:TraesCS3A01G205800	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF101	PFAM:PF00096
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15

Description

No Description!

Coordinates

chr3A:-:362200175..362202521

Molecular Weight (calculated)

51726.8 Da

IEP (calculated)

8.311

GRAVY (calculated)

-0.695

Length

477 amino acids

Sequence
(BLAST)

001: MYHHHLQQQQ QQRGEAEAAD QDQDSSMSNL TTSASASAKP PPPPPPTPAS NKRKRSLPGN PDPESEVVAL SPATLMATNR FLCEICGKGF QRDQNLQLHR
101: RGHNLPWKLK QRGSKEVVRK KVYICPEASC VHHDPSRALG DLTGIKKHFF RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TVFSRRDSFI
201: THRAFCDALT EESNKAISGG GLPLPPIAHA QHHAMLYSPH DLMQQHHHQE LAAFQDHQHQ VMQQNCNFDV KPEMQPWPTM PYDDVHHPLL QPLCSATAQS
301: SATSVPTPTH HQQQQLPAAA AHLSATALLQ KAAQMGATIG GAGAGGAGVH YTQMAGSATS ATGSATFGLG LSCLSNQQMM SLARTASQGR SGEEGGASGG
401: ANDGMTRDFL GLRAFSHRDI LGLAGFDSSC MGAAVNTAGN NTNMAPCYEP QQQGQPQPQP PQQQISNEPW HGMGSHS

Best Arabidopsis Sequence Match ( AT1G55110.2 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.