Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G209800.1 | Wheat | nucleus | 96.1 | 93.46 |
| TraesCS3B01G237700.1 | Wheat | nucleus | 94.79 | 92.58 |
| TraesCS3A01G205800.1 | Wheat | nucleus | 95.44 | 92.24 |
| Zm00001d011223_P002 | Maize | nucleus | 58.13 | 57.27 |
| EES00944 | Sorghum | nucleus | 59.22 | 56.76 |
| Zm00001d044261_P001 | Maize | nucleus | 57.05 | 54.79 |
| Os01t0572300-01 | Rice | nucleus | 53.36 | 45.81 |
| HORVU4Hr1G070950.8 | Barley | nucleus | 40.13 | 34.51 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 25.38 | 27.53 |
| HORVU2Hr1G036710.3 | Barley | nucleus | 30.37 | 16.13 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EMBL:AK362855 | EMBL:AK375351 | UniProt:F2DG38 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:HORVU3Hr1G049810 | EnsemblPlants:HORVU3Hr1G049810.3 | InterPro:IPR013087 | PFAM:PF00096 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF101 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI00020068AF | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DG38]
Coordinates
chrchr3H:-:352960734..352964267
Molecular Weight (calculated)
49777.5 Da
IEP (calculated)
8.207
GRAVY (calculated)
-0.619
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MYHHHLQQRG EAEEAASASA DQDSSMSNLT TSASASANPP PPPPTTASNK RKRSLPGNPD PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG
101: HNLPWKLKQR GSKEVVRKKV YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTV FSRRDSFITH
201: RAFCDALTEE SNKAISGLPL APPMAHAQHH AMLYSPHDLM QQHQELAAFQ DHHHPQVMQQ HCNYDVKPEM QPWPTMPYDD VHHPLLQPLC SATAQGSATS
301: VPTPAAAAHL SATALLQKAA QMGATIGGAG AGGAGVHYTQ MAGSATSATG SATFGLGLSC LSNQQMMSLA RTASQGRSGE EGASGGANDG MTRDFLGLRA
401: FSHRDILGLA GFDSSCMGAA VNTASNNINM APCYDPQQQG QPQPQQQQSS NEPWHGMGSH S
101: HNLPWKLKQR GSKEVVRKKV YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTV FSRRDSFITH
201: RAFCDALTEE SNKAISGLPL APPMAHAQHH AMLYSPHDLM QQHQELAAFQ DHHHPQVMQQ HCNYDVKPEM QPWPTMPYDD VHHPLLQPLC SATAQGSATS
301: VPTPAAAAHL SATALLQKAA QMGATIGGAG AGGAGVHYTQ MAGSATSATG SATFGLGLSC LSNQQMMSLA RTASQGRSGE EGASGGANDG MTRDFLGLRA
401: FSHRDILGLA GFDSSCMGAA VNTASNNINM APCYDPQQQG QPQPQQQQSS NEPWHGMGSH S
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.