Factsheet for HORVU2Hr1G036710.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G035730.4
HORVU2Hr1G113360.1
HORVU2Hr1G113480.1
HORVU2Hr1G113490.1
HORVU3Hr1G106260.1
HORVU4Hr1G026010.3
HORVU4Hr1G039890.2
HORVU5Hr1G043310.1
HORVU5Hr1G045920.2
HORVU7Hr1G055440.9

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	HORVU5Hr1G045920.2	AT3G54220.1	17785527
AT1G03840.1	HORVU2Hr1G035730.4	AT4G37650.1	17785527
AT5G44160.1	HORVU2Hr1G113360.1	AT1G50420.1	21798944
AT5G44160.1	HORVU2Hr1G113480.1	AT1G50420.1	21798944
AT5G44160.1	HORVU2Hr1G113490.1	AT1G50420.1	21798944
AT5G44160.1	HORVU3Hr1G106260.1	AT1G50420.1	21798944
AT5G44160.1	HORVU4Hr1G026010.3	AT1G50420.1	21798944
AT5G44160.1	HORVU5Hr1G043310.1	AT1G50420.1	21798944
AT5G44160.1	HORVU4Hr1G039890.2	AT3G12280.1	22921914
AT5G44160.1	HORVU7Hr1G055440.9	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G188400.2	Wheat	nucleus	84.68	88.55
TraesCS2B01G218900.1	Wheat	nucleus	81.68	88.4
TraesCS2D01G199300.3	Wheat	nucleus	84.33	86.63
Os07t0581366-00	Rice	cytosol, nucleus	50.69	69.4
Zm00001d006682_P001	Maize	nucleus	49.19	57.55
EER97442	Sorghum	nucleus	51.15	56.63
Zm00001d021932_P001	Maize	nucleus	51.73	55.09
CDY14910	Canola	nucleus	7.95	51.88
Bra036013.1-P	Field mustard	nucleus	9.22	50.63
CDY72283	Canola	nucleus	10.83	49.74
VIT_12s0028g03030.t01	Wine grape	nucleus	18.43	37.47
HORVU4Hr1G070950.8	Barley	nucleus	22.0	35.63
AT5G44160.1	Thale cress	nucleus	17.51	32.62
Bra033724.1-P	Field mustard	nucleus	17.4	32.54
CDY22307	Canola	nucleus	17.4	32.54
KRH22332	Soybean	nucleus	17.74	32.49
KRH26995	Soybean	nucleus	17.86	32.29
KRH25657	Soybean	nucleus	17.51	32.27
CDX94759	Canola	nucleus	17.17	32.11
KRH55868	Soybean	nucleus	17.28	31.65
KRH49655	Soybean	nucleus	13.02	31.22
CDY18188	Canola	nucleus	16.94	30.69
Bra015271.1-P	Field mustard	nucleus	16.94	30.5
CDX89862	Canola	nucleus	16.82	30.42
HORVU3Hr1G049810.3	Barley	nucleus	16.13	30.37
AT1G03840.1	Thale cress	nucleus	17.4	29.84
Bra032541.1-P	Field mustard	nucleus	16.82	29.8
CDY32514	Canola	nucleus	16.82	29.8
PGSC0003DMT400024272	Potato	nucleus	16.94	29.7
Solyc07g053570.2.1	Tomato	nucleus	16.94	29.28
HORVU4Hr1G064740.2	Barley	nucleus, plastid	11.41	23.29

Protein Annotations

EnsemblPlants:HORVU2Hr1G036710.3	EnsemblPlantsGene:HORVU2Hr1G036710	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593	PANTHER:PTHR10593:SF29
PFAM:PF00096	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000B4670E2	UniProt:A0A287HQ85	MapMan:15.5.15	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:164591039..164598090

Molecular Weight (calculated)

91419.2 Da

IEP (calculated)

5.020

GRAVY (calculated)

-0.766

Length

868 amino acids

Sequence
(BLAST)

001: MPPNPTEPEQ PEAAATPAPP KKKRNLPGTP DPDAEVIALS PGTLMATNRF VCEVCGKGFQ RDQNLQLHRR GHNLPWRLRQ RGPGXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXHFC RKHGEKRWAC PRCGKRYAVQ ADLKAHAKTC GTREYRCDCG TLFTRRDSFV THRAFCGALV EETGRVLAVP TPPSPRPPDL
201: EEVEENVDKD KEKEEENVDK HKEKEDEEGK GGEDENETSA VAEVDEPQHI EATREEPQPQ PQRTPSPPSP MPQEQHPMVA IVPNLDEPVV VVEPIVDIKQ
301: EEEDKRDEDV CFQEADNYGD AELEDSNLPD NDTPMPPCFL PSPSDAIGTD GSSTSCGTVS SASNSIVPAT TTSTFAGLFA SATKSTTPQS RSLRDLIGVD
401: PTFLCLAIGT PSSLFPQTDA SNPSTFAPPP APHISATALL QKAAEAGASQ AGTSFLKEFG LASSSSSTPS RPPQGRSMDC STQSQRPQGR FVDSSSIQSR
501: LPQDRFIESS STQCRLPQDR FIESSSTQSR LPQDRFIDSS PTQSRLPQDR FIDSSSTQFR LPQDRFIDNS SIQSRVPQDR FIDTSSTQSR LPQDRFIDSS
601: STQSRLPQDR FIDSSSTQSR LPQDRFIDNS MPSKLSQGRF MDTSLPSQQL LPQGRFFDNS PPSNLSQGRF FENSQPSNPP QGRFFINSPP SNLPHGRFTD
701: YSTPGMFIDS STLPRLPQGR YIDSLPQSRL PQGRYMDNSP PAQLPQRRLA DNNPEQWHQR SNNHNQLMDM EPGPMVSGSL GLGLAYEGSN PRLPDLMMGQ
801: SPLFGPKPAT LDFLGLGIGG TMGGGSTAAN GGGLPALMVG GELDMGSAAQ APSPWEEAQR KTNGRTIL

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.