Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89862 | Canola | nucleus | 96.87 | 96.67 |
| CDY72283 | Canola | nucleus | 35.7 | 90.48 |
| CDY14910 | Canola | nucleus | 23.59 | 84.96 |
| CDY09390 | Canola | nucleus | 20.88 | 84.03 |
| CDY04118 | Canola | nucleus | 20.88 | 84.03 |
| CDY32514 | Canola | nucleus | 84.97 | 83.06 |
| AT1G03840.1 | Thale cress | nucleus | 86.64 | 82.02 |
| CDY37489 | Canola | nucleus | 26.51 | 69.02 |
| CDY53540 | Canola | nucleus | 26.3 | 64.95 |
| CDX94759 | Canola | nucleus | 62.21 | 64.22 |
| CDY22307 | Canola | nucleus | 61.8 | 63.79 |
| CDY04117 | Canola | nucleus | 27.97 | 62.62 |
| Zm00001d039254_P001 | Maize | nucleus | 42.38 | 57.34 |
| Os01t0242200-01 | Rice | nucleus | 49.27 | 56.87 |
| GSMUA_Achr7P14780_001 | Banana | nucleus | 41.96 | 56.3 |
| CDY70142 | Canola | nucleus | 21.29 | 56.04 |
| PGSC0003DMT400024272 | Potato | nucleus | 53.03 | 51.31 |
| Solyc07g053570.2.1 | Tomato | nucleus | 52.82 | 50.4 |
| GSMUA_Achr9P06650_001 | Banana | nucleus | 38.2 | 49.86 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 50.1 | 48.88 |
| TraesCS3A01G170700.1 | Wheat | nucleus | 49.69 | 48.67 |
| EES02157 | Sorghum | nucleus | 48.85 | 48.65 |
| GSMUA_Achr10P... | Banana | nucleus | 38.2 | 48.54 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 49.69 | 48.47 |
| GSMUA_Achr6P27030_001 | Banana | nucleus | 35.28 | 47.74 |
| VIT_12s0028g03030.t01 | Wine grape | nucleus | 42.17 | 47.31 |
| CDX96046 | Canola | nucleus | 22.34 | 45.92 |
| CDX97281 | Canola | nucleus, plastid | 35.07 | 43.64 |
| KRH22332 | Soybean | nucleus | 42.8 | 43.25 |
| Zm00001d009030_P002 | Maize | nucleus | 40.08 | 42.95 |
| CDY24490 | Canola | nucleus | 38.41 | 42.3 |
| CDX77936 | Canola | nucleus | 38.41 | 42.2 |
| KRH26995 | Soybean | nucleus | 42.17 | 42.08 |
| CDX91304 | Canola | nucleus, plastid | 35.07 | 41.58 |
| CDX75732 | Canola | nucleus | 38.41 | 41.53 |
| CDY17615 | Canola | nucleus | 45.09 | 40.99 |
| CDY03081 | Canola | nucleus | 44.68 | 40.84 |
| CDX82515 | Canola | nucleus | 36.95 | 40.14 |
| CDX86010 | Canola | nucleus | 37.37 | 39.96 |
| CDY53836 | Canola | nucleus | 37.58 | 39.74 |
| CDX97521 | Canola | nucleus | 39.67 | 39.18 |
| CDY55238 | Canola | nucleus | 39.67 | 39.09 |
| CDY59418 | Canola | nucleus | 33.61 | 38.98 |
| CDY51742 | Canola | nucleus | 39.25 | 38.84 |
| CDY17440 | Canola | nucleus | 38.41 | 38.49 |
| CDY10404 | Canola | nucleus | 40.5 | 38.26 |
| CDY11241 | Canola | nucleus | 40.08 | 38.17 |
| CDY15811 | Canola | nucleus | 45.09 | 38.03 |
| CDY44344 | Canola | nucleus | 39.67 | 38.0 |
| CDY09391 | Canola | nucleus | 44.89 | 37.92 |
| CDY67009 | Canola | nucleus | 37.58 | 37.82 |
| CDX80854 | Canola | nucleus | 39.67 | 37.62 |
| CDX81372 | Canola | nucleus | 38.2 | 37.42 |
| CDY17614 | Canola | nucleus, plastid | 39.87 | 37.23 |
| CDY57128 | Canola | nucleus | 38.2 | 37.2 |
| CDY15814 | Canola | nucleus | 36.53 | 37.0 |
| CDX70328 | Canola | nucleus | 39.67 | 36.97 |
| CDY03080 | Canola | nucleus, plastid | 39.46 | 36.63 |
| CDX81653 | Canola | nucleus | 35.7 | 36.62 |
| CDY45271 | Canola | nucleus | 30.27 | 34.86 |
| CDY45270 | Canola | nucleus | 31.32 | 33.33 |
| CDY04204 | Canola | nucleus | 22.55 | 30.08 |
| CDX84974 | Canola | nucleus | 23.8 | 29.77 |
| CDY70938 | Canola | cytosol, nucleus | 16.91 | 29.67 |
| CDY60366 | Canola | nucleus | 23.59 | 29.5 |
| CDY04203 | Canola | plastid | 23.59 | 29.35 |
| CDY51986 | Canola | nucleus | 22.96 | 29.1 |
| CDY36123 | Canola | nucleus | 22.96 | 29.1 |
| CDY07400 | Canola | nucleus | 24.01 | 27.84 |
| CDY67587 | Canola | cytosol, nucleus | 12.94 | 27.56 |
| CDY12268 | Canola | nucleus | 24.84 | 26.68 |
| CDY17620 | Canola | nucleus | 24.63 | 26.58 |
| CDY09400 | Canola | nucleus | 24.01 | 26.26 |
| CDY04102 | Canola | nucleus | 24.43 | 26.06 |
| CDY60095 | Canola | nucleus | 24.01 | 26.02 |
| CDY63960 | Canola | nucleus | 24.43 | 25.94 |
| CDY15800 | Canola | nucleus | 23.8 | 25.79 |
| Os07t0581366-00 | Rice | cytosol, nucleus | 33.82 | 25.55 |
| CDY68983 | Canola | nucleus | 20.25 | 24.81 |
| Zm00001d006682_P001 | Maize | nucleus | 35.49 | 22.91 |
| EER97442 | Sorghum | nucleus | 35.91 | 21.94 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 35.7 | 21.32 |
| Zm00001d021932_P001 | Maize | nucleus | 36.12 | 21.23 |
| TraesCS2A01G188400.2 | Wheat | nucleus | 35.91 | 20.72 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 35.7 | 20.24 |
| HORVU2Hr1G036710.3 | Barley | nucleus | 30.69 | 16.94 |
Protein Annotations
| EnsemblPlants:CDY18188 | EnsemblPlantsGene:GSBRNA2T00002716001 | Gene3D:3.30.160.60 | GO:A0A078G0P7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF26 |
| PFAM:PF00096 | PFscan:PS50157 | ProteinID:CDY18188 | ProteinID:CDY18188.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE0DE2 | UniProt:A0A078G0P7 | MapMan:15.5.15 | : |
Description
BnaC05g02110DBnaC05g02110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0P7]
Coordinates
chrLK032083:-:216799..219107
Molecular Weight (calculated)
52939.1 Da
IEP (calculated)
8.331
GRAVY (calculated)
-0.609
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAEDQTISS SGGYVQSSST TGHVDHHHEL ESFNPPPAKK KRNLPGNPDP EAEVIALSPT TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT
101: TKEVRKRVYV CPEKSCVHHH PTRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS RRDSFITHRA FCDALAEETA
201: RLNAASHLKS LTSNNLNYHY LMGTLIPSPP PFPFGPPQPL QQHHFPITTN TFDHHHHDVM KPASSLSLWM GGNNNHHQVT VDEGIAPQED YNWVFGNANN
301: RGELITTSDS LITHENINIV SSKENANAAT SLSVPSLFSS VDHITQDANA ASSAVANMSA TALLQKAAQM GVTSSTPTTI TTKQSTFHQT VEEGGSDKFF
401: ALFGPNSVGL MSNNGLQHEI ENPRSGVMVA SGIDELQNYP LKRRRVESGD AGGGGQTRDF LGVGVQTMCH HSSFINGWI
101: TKEVRKRVYV CPEKSCVHHH PTRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS RRDSFITHRA FCDALAEETA
201: RLNAASHLKS LTSNNLNYHY LMGTLIPSPP PFPFGPPQPL QQHHFPITTN TFDHHHHDVM KPASSLSLWM GGNNNHHQVT VDEGIAPQED YNWVFGNANN
301: RGELITTSDS LITHENINIV SSKENANAAT SLSVPSLFSS VDHITQDANA ASSAVANMSA TALLQKAAQM GVTSSTPTTI TTKQSTFHQT VEEGGSDKFF
401: ALFGPNSVGL MSNNGLQHEI ENPRSGVMVA SGIDELQNYP LKRRRVESGD AGGGGQTRDF LGVGVQTMCH HSSFINGWI
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.