Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37489 | Canola | nucleus | 38.37 | 92.39 |
| CDX82515 | Canola | nucleus | 86.23 | 86.62 |
| CDY04118 | Canola | nucleus | 22.57 | 84.03 |
| CDY09390 | Canola | nucleus | 22.12 | 82.35 |
| CDY51742 | Canola | nucleus | 82.39 | 75.41 |
| CDX97521 | Canola | nucleus | 80.81 | 73.81 |
| CDY14910 | Canola | nucleus | 21.9 | 72.93 |
| CDY55238 | Canola | nucleus | 79.68 | 72.63 |
| CDY70142 | Canola | nucleus | 29.35 | 71.43 |
| AT3G13810.2 | Thale cress | nucleus | 79.68 | 68.68 |
| CDY72283 | Canola | nucleus | 28.67 | 67.2 |
| CDY53540 | Canola | nucleus | 28.22 | 64.43 |
| CDY04117 | Canola | nucleus | 27.99 | 57.94 |
| CDY70938 | Canola | cytosol, nucleus | 32.05 | 52.01 |
| CDX97281 | Canola | nucleus, plastid | 38.37 | 44.16 |
| CDX96046 | Canola | nucleus | 22.57 | 42.92 |
| CDX91304 | Canola | nucleus, plastid | 38.83 | 42.57 |
| CDY24490 | Canola | nucleus | 38.83 | 39.54 |
| CDX77936 | Canola | nucleus | 38.6 | 39.22 |
| CDX94759 | Canola | nucleus | 40.41 | 38.58 |
| CDY18188 | Canola | nucleus | 41.53 | 38.41 |
| CDX89862 | Canola | nucleus | 41.53 | 38.33 |
| CDY22307 | Canola | nucleus | 39.95 | 38.15 |
| CDY32514 | Canola | nucleus | 41.76 | 37.76 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 44.24 | 36.84 |
| CDX86010 | Canola | nucleus | 37.25 | 36.83 |
| CDY67009 | Canola | nucleus | 39.5 | 36.76 |
| CDY59418 | Canola | nucleus | 34.09 | 36.56 |
| CDY11241 | Canola | nucleus | 41.31 | 36.38 |
| CDX80854 | Canola | nucleus | 41.31 | 36.24 |
| CDY53836 | Canola | nucleus | 37.02 | 36.2 |
| CDY44344 | Canola | nucleus | 40.86 | 36.2 |
| CDY10404 | Canola | nucleus | 40.86 | 35.7 |
| CDX81372 | Canola | nucleus | 39.28 | 35.58 |
| CDX70328 | Canola | nucleus | 40.63 | 35.02 |
| CDY57128 | Canola | nucleus | 38.83 | 34.96 |
| CDY17440 | Canola | nucleus | 37.7 | 34.94 |
| CDY45271 | Canola | nucleus | 32.73 | 34.86 |
| CDY17615 | Canola | nucleus | 40.86 | 34.35 |
| CDY03081 | Canola | nucleus | 40.41 | 34.16 |
| CDX81653 | Canola | nucleus | 35.67 | 33.83 |
| CDY15814 | Canola | nucleus | 35.67 | 33.4 |
| CDY17614 | Canola | nucleus, plastid | 38.37 | 33.14 |
| CDY03080 | Canola | nucleus, plastid | 38.37 | 32.95 |
| CDY45270 | Canola | nucleus | 33.18 | 32.67 |
| CDY09391 | Canola | nucleus | 41.31 | 32.28 |
| CDY15811 | Canola | nucleus | 41.31 | 32.22 |
| CDY04204 | Canola | nucleus | 23.7 | 29.25 |
| CDX84974 | Canola | nucleus | 24.83 | 28.72 |
| CDY60366 | Canola | nucleus | 24.61 | 28.46 |
| CDY36123 | Canola | nucleus | 23.93 | 28.04 |
| CDY51986 | Canola | nucleus | 23.93 | 28.04 |
| CDY04203 | Canola | plastid | 24.15 | 27.79 |
| CDY67587 | Canola | cytosol, nucleus | 14.0 | 27.56 |
| CDY07400 | Canola | nucleus | 25.06 | 26.88 |
| CDY09400 | Canola | nucleus | 25.96 | 26.26 |
| CDY17620 | Canola | nucleus | 25.96 | 25.9 |
| CDY15800 | Canola | nucleus | 25.73 | 25.79 |
| CDY60095 | Canola | nucleus | 25.51 | 25.57 |
| CDY04102 | Canola | nucleus | 25.73 | 25.39 |
| CDY63960 | Canola | nucleus | 25.28 | 24.83 |
| CDY12268 | Canola | nucleus | 24.61 | 24.44 |
| CDY68983 | Canola | nucleus | 20.32 | 23.02 |
Protein Annotations
| EnsemblPlants:CDX75732 | EnsemblPlantsGene:GSBRNA2T00123653001 | Gene3D:3.30.160.60 | GO:A0A078CG17 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF49 | PFAM:PF12171 | PFscan:PS50157 | ProteinID:CDX75732 | ProteinID:CDX75732.1 | ScanProsite:PS00028 |
| SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EF3632 | MapMan:15.5.15 | : |
Description
BnaC03g38150D
Coordinates
chrLK031805:+:256969..260328
Molecular Weight (calculated)
49431.5 Da
IEP (calculated)
9.816
GRAVY (calculated)
-0.799
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSKDILLHQ QVQQQQQQEE NMSNLTSASG DQTTTTTTTT TTPQKKRRNQ PGNPDPESEV IALSPKTLMA RNRFVCEICN KGFQRDQNLQ LHKRGHNLPW
101: KLKQRSNKEV IRKKVYVCPE ASCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDCKAHS KTCGTKEYRC DCGTIFSRRD SFITHRAFCE
201: ALAKETAREV VIPQEQNHQP NPILVHQSTF HHQHHQAQPN MNFSSSNTSS NHLHTFPVKK EQQQSNDHMI NYHHQSIPPW LAPHDLTFPN PNPNNGGGGL
301: FSLAAFPAMS ATALLQKAAQ MGSTKTPPLP PTTDFERSAH HNTLTTTMAA MMTSPSGFIS SNNNNQVFLQ GYHGGEQAFD HTFSALLRTN KRGGGGGVGE
401: GLTRDFLGLR PLMSHNEILS IAGLGNCITG PAPDQLRPKP WKG
101: KLKQRSNKEV IRKKVYVCPE ASCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDCKAHS KTCGTKEYRC DCGTIFSRRD SFITHRAFCE
201: ALAKETAREV VIPQEQNHQP NPILVHQSTF HHQHHQAQPN MNFSSSNTSS NHLHTFPVKK EQQQSNDHMI NYHHQSIPPW LAPHDLTFPN PNPNNGGGGL
301: FSLAAFPAMS ATALLQKAAQ MGSTKTPPLP PTTDFERSAH HNTLTTTMAA MMTSPSGFIS SNNNNQVFLQ GYHGGEQAFD HTFSALLRTN KRGGGGGVGE
401: GLTRDFLGLR PLMSHNEILS IAGLGNCITG PAPDQLRPKP WKG
001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
Arabidopsis Description
AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.