Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024841.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY60095 | Canola | nucleus | 95.95 | 96.38 |
| CDY15800 | Canola | nucleus | 88.29 | 88.69 |
| CDY09400 | Canola | nucleus | 85.81 | 86.99 |
| AT2G01940.3 | Thale cress | nucleus | 86.26 | 85.87 |
| CDY63960 | Canola | nucleus | 87.16 | 85.81 |
| CDY04102 | Canola | nucleus | 86.49 | 85.52 |
| CDX96046 | Canola | nucleus | 37.39 | 71.24 |
| CDY09390 | Canola | nucleus | 17.12 | 63.87 |
| CDY04118 | Canola | nucleus | 17.12 | 63.87 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 60.14 | 62.82 |
| CDY14910 | Canola | nucleus | 17.79 | 59.4 |
| KRH58582 | Soybean | nucleus | 57.88 | 58.41 |
| CDY04204 | Canola | nucleus | 46.85 | 57.94 |
| CDY60366 | Canola | nucleus | 49.1 | 56.92 |
| KRH42485 | Soybean | nucleus | 57.88 | 56.86 |
| CDX84974 | Canola | nucleus | 48.87 | 56.66 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 47.97 | 56.35 |
| CDY04203 | Canola | plastid | 48.65 | 56.1 |
| CDY07400 | Canola | nucleus | 51.8 | 55.69 |
| CDY36123 | Canola | nucleus | 47.07 | 55.29 |
| CDY51986 | Canola | nucleus | 46.85 | 55.03 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 46.17 | 53.95 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 44.59 | 53.51 |
| GSMUA_Achr10P... | Banana | nucleus | 45.05 | 52.22 |
| CDY37489 | Canola | nucleus | 21.62 | 52.17 |
| CDY72283 | Canola | nucleus | 22.07 | 51.85 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 49.1 | 51.42 |
| GSMUA_Achr10P... | Banana | nucleus | 43.69 | 48.62 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.44 | 48.04 |
| Solyc05g054030.2.1 | Tomato | nucleus | 41.22 | 48.03 |
| CDY53540 | Canola | nucleus | 20.72 | 47.42 |
| Zm00001d005871_P002 | Maize | nucleus | 45.5 | 45.8 |
| CDY04117 | Canola | nucleus | 21.85 | 45.33 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 41.22 | 45.19 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 41.67 | 44.69 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 41.67 | 44.58 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 41.44 | 43.29 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 47.97 | 43.29 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 47.75 | 43.18 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 47.75 | 43.18 |
| Os03t0237250-01 | Rice | plastid | 42.34 | 42.92 |
| Zm00001d020683_P001 | Maize | nucleus | 47.3 | 42.25 |
| EER96827 | Sorghum | nucleus | 47.07 | 41.88 |
| CDY70142 | Canola | nucleus | 17.12 | 41.76 |
| Zm00001d031759_P001 | Maize | nucleus | 48.42 | 41.51 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 42.12 | 41.37 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 41.44 | 41.07 |
| KXG39813 | Sorghum | nucleus, plastid | 41.44 | 40.09 |
| EES13982 | Sorghum | nucleus | 48.2 | 39.93 |
| Os08t0467100-01 | Rice | nucleus | 47.75 | 39.77 |
| CDX97281 | Canola | nucleus, plastid | 25.9 | 29.87 |
| CDY24490 | Canola | nucleus | 28.6 | 29.2 |
| CDX77936 | Canola | nucleus | 28.15 | 28.67 |
| CDX91304 | Canola | nucleus, plastid | 25.9 | 28.47 |
| CDX86010 | Canola | nucleus | 26.8 | 26.56 |
| CDY53836 | Canola | nucleus | 26.8 | 26.27 |
| CDX75732 | Canola | nucleus | 25.9 | 25.96 |
| CDY67009 | Canola | nucleus | 27.48 | 25.63 |
| CDY59418 | Canola | nucleus | 23.65 | 25.42 |
| CDX94759 | Canola | nucleus | 26.35 | 25.22 |
| CDY22307 | Canola | nucleus | 26.35 | 25.22 |
| CDX82515 | Canola | nucleus | 24.77 | 24.94 |
| CDX89862 | Canola | nucleus | 26.8 | 24.79 |
| CDY18188 | Canola | nucleus | 26.58 | 24.63 |
| CDX81372 | Canola | nucleus | 27.03 | 24.54 |
| CDY57128 | Canola | nucleus | 27.03 | 24.39 |
| CDY45271 | Canola | nucleus | 22.75 | 24.28 |
| CDY51742 | Canola | nucleus | 26.13 | 23.97 |
| CDX97521 | Canola | nucleus | 26.13 | 23.92 |
| CDY55238 | Canola | nucleus | 26.13 | 23.87 |
| CDY45270 | Canola | nucleus | 24.1 | 23.78 |
| CDY32514 | Canola | nucleus | 25.9 | 23.47 |
| CDY15814 | Canola | nucleus | 24.77 | 23.26 |
| CDX81653 | Canola | nucleus | 24.32 | 23.13 |
| CDY17440 | Canola | nucleus | 24.55 | 22.8 |
| CDY44344 | Canola | nucleus | 25.68 | 22.8 |
| CDX80854 | Canola | nucleus | 25.68 | 22.57 |
| CDY10404 | Canola | nucleus | 25.68 | 22.49 |
| CDY11241 | Canola | nucleus | 25.45 | 22.47 |
| CDY17614 | Canola | nucleus, plastid | 25.9 | 22.42 |
| CDY03081 | Canola | nucleus | 26.35 | 22.33 |
| CDY03080 | Canola | nucleus, plastid | 25.9 | 22.29 |
| CDY17615 | Canola | nucleus | 26.35 | 22.2 |
| CDX70328 | Canola | nucleus | 25.45 | 21.98 |
| CDY09391 | Canola | nucleus | 26.58 | 20.81 |
| CDY15811 | Canola | nucleus | 26.58 | 20.77 |
| CDY12268 | Canola | nucleus | 18.69 | 18.61 |
| CDY68983 | Canola | nucleus | 15.09 | 17.14 |
| CDY70938 | Canola | cytosol, nucleus | 9.46 | 15.38 |
| CDY67587 | Canola | cytosol, nucleus | 6.31 | 12.44 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078FSX3 | UniProt:A0A078FSX3 | EnsemblPlants:CDY17620 | ProteinID:CDY17620 |
| ProteinID:CDY17620.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | EnsemblPlantsGene:GSBRNA2T00001830001 | InterPro:IPR013087 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF6 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI000253F931 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
BnaA06g34390DBnaA06g34390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSX3]
Coordinates
chrLK032076:+:152990..155404
Molecular Weight (calculated)
49878.9 Da
IEP (calculated)
9.081
GRAVY (calculated)
-0.801
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTDQGAVVM LDDAASKKNT ANTRCVVFSS SDPLLSSSEN GVTTTKTSIQ KRKRRPAGTP DPDAEVVSLS PRTLLESDRY ICEICNQGFQ RDQNLQMHRR
101: RHKVPWKLLK RDNNIEVKKR VYVCPEPSCL HHDPCHALGD LVGIKKHFRR KHSNHKQWVC EKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI
201: EHQDNCSVRN VHHEPPPPPQ TAVIVTACSS RTASTASTPS SETNYGGAVT VATPLPLEGR PIHIRSSSLT PLLLTNSSNL NLELQLLPST PNLNPNQENQ
301: QHKVKEPSLH HHHHHHNHDT TNLNLSIAPS SSSYHHYNNF DRIKELMASE EIMKEKAYAE EAKREAKRQR EIAENEFANA KKIRQQAQTE LKRAKLLKEQ
401: SMKKISSTLM QVTCQTCKGQ FQATEETSLV VSYMSSANTD GEGS
101: RHKVPWKLLK RDNNIEVKKR VYVCPEPSCL HHDPCHALGD LVGIKKHFRR KHSNHKQWVC EKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI
201: EHQDNCSVRN VHHEPPPPPQ TAVIVTACSS RTASTASTPS SETNYGGAVT VATPLPLEGR PIHIRSSSLT PLLLTNSSNL NLELQLLPST PNLNPNQENQ
301: QHKVKEPSLH HHHHHHNHDT TNLNLSIAPS SSSYHHYNNF DRIKELMASE EIMKEKAYAE EAKREAKRQR EIAENEFANA KKIRQQAQTE LKRAKLLKEQ
401: SMKKISSTLM QVTCQTCKGQ FQATEETSLV VSYMSSANTD GEGS
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.