Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G233700.1 | Wheat | nucleus | 96.54 | 96.74 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 95.94 | 96.13 |
| Zm00001d005871_P002 | Maize | nucleus | 65.24 | 72.79 |
| EER96827 | Sorghum | nucleus | 70.33 | 69.34 |
| Zm00001d020683_P001 | Maize | nucleus | 69.92 | 69.22 |
| Os08t0467100-01 | Rice | nucleus | 69.72 | 64.35 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 49.19 | 64.02 |
| CDX96046 | Canola | nucleus | 30.08 | 63.52 |
| Zm00001d031759_P001 | Maize | nucleus | 66.87 | 63.51 |
| EES13982 | Sorghum | nucleus | 67.07 | 61.57 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 46.95 | 60.79 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 44.72 | 59.46 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 50.81 | 58.96 |
| Solyc01g005060.2.1 | Tomato | nucleus | 40.04 | 58.11 |
| GSMUA_Achr10P... | Banana | nucleus | 44.51 | 57.18 |
| KRH60588 | Soybean | nucleus | 45.53 | 56.0 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 49.59 | 55.84 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 47.97 | 55.53 |
| Solyc06g072360.2.1 | Tomato | nucleus | 44.11 | 55.36 |
| KRH41885 | Soybean | nucleus | 42.48 | 55.0 |
| AT1G25250.3 | Thale cress | nucleus | 42.28 | 54.03 |
| PGSC0003DMT400069306 | Potato | nucleus | 44.72 | 53.53 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.67 | 53.52 |
| VIT_17s0000g01870.t01 | Wine grape | nucleus | 49.39 | 53.41 |
| CDX84974 | Canola | nucleus | 41.26 | 53.0 |
| CDY36123 | Canola | nucleus | 40.65 | 52.91 |
| Bra010981.1-P | Field mustard | nucleus | 40.65 | 52.91 |
| Solyc03g098070.2.1 | Tomato | nucleus | 39.02 | 52.75 |
| CDY60366 | Canola | nucleus | 41.06 | 52.74 |
| CDY04204 | Canola | nucleus | 38.41 | 52.65 |
| CDY51986 | Canola | nucleus | 40.45 | 52.65 |
| Bra024771.1-P | Field mustard | nucleus | 40.85 | 52.48 |
| KRH38986 | Soybean | nucleus | 49.39 | 51.27 |
| KRH58582 | Soybean | nucleus | 45.53 | 50.91 |
| KRH48724 | Soybean | nucleus | 49.8 | 50.72 |
| GSMUA_Achr10P... | Banana | nucleus | 40.65 | 50.13 |
| CDY04203 | Canola | plastid | 39.02 | 49.87 |
| KRH42485 | Soybean | nucleus | 45.53 | 49.56 |
| AT1G68130.1 | Thale cress | nucleus | 42.07 | 49.4 |
| CDY07400 | Canola | nucleus | 41.46 | 49.39 |
| Bra004050.1-P | Field mustard | nucleus | 41.46 | 49.39 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 40.65 | 49.38 |
| Bra004283.1-P | Field mustard | nucleus | 41.26 | 49.27 |
| Bra026624.1-P | Field mustard | nucleus | 43.7 | 49.09 |
| Bra017432.1-P | Field mustard | nucleus | 43.7 | 48.86 |
| CDY09400 | Canola | nucleus | 43.29 | 48.63 |
| CDY15800 | Canola | nucleus | 43.5 | 48.42 |
| AT2G01940.3 | Thale cress | nucleus | 43.7 | 48.21 |
| CDY63960 | Canola | nucleus | 44.11 | 48.12 |
| CDY17620 | Canola | nucleus | 43.29 | 47.97 |
| Bra024841.1-P | Field mustard | nucleus | 43.29 | 47.97 |
| CDY04102 | Canola | nucleus | 43.7 | 47.88 |
| CDY60095 | Canola | nucleus | 42.07 | 46.83 |
| Solyc05g054030.2.1 | Tomato | nucleus | 34.15 | 44.09 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 23.37 | 28.12 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 24.8 | 24.85 |
| TraesCS3B01G237700.1 | Wheat | nucleus | 23.58 | 24.58 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 26.22 | 24.43 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 25.2 | 24.27 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 23.78 | 23.54 |
| TraesCS2B01G306100.1 | Wheat | nucleus | 22.76 | 23.19 |
| TraesCS4B01G296200.1 | Wheat | nucleus | 22.56 | 22.93 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 24.8 | 22.34 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 23.98 | 20.49 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 25.2 | 20.26 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 25.0 | 15.34 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G232200.1 | EnsemblPlantsGene:TraesCS5B01G232200 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF54 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5B:+:409872927..409875895
Molecular Weight (calculated)
52764.3 Da
IEP (calculated)
8.717
GRAVY (calculated)
-0.535
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGSCGPMAG PPTDEETAEP PFGSSLQIAT GSPATKRKRR PAGTPDPDAE VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE
101: AARKRVFVCP EPSCLHHDPS HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CTAGCPQAGA
201: GVAAPVCGGV AAALSSQQQA PPPAISLSRS RTASSTSPSS DVVISAVTWP GAAAMRRPNA AAFHRFEQQL PSPRTPPPDG RGGGGHNLEL QLMPPSSSCT
301: GGAAAPLGVA PSWYAAPQSP PAPISQGDNA AMQLQLSIGF CSGDNRGRTD VAGPSSGSAA RTMQEAREEL RQAMAEKAAA DEARAQAKRQ GELAEQELAS
401: AKRMRHQAQV ELSRAHALRE HAVRQVNATL LQITCFSCRQ KFRAVRPSAA MSSEVACSYV TEGGDVEVDN VDEPLILDGM RRRQQHATMD TV
101: AARKRVFVCP EPSCLHHDPS HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CTAGCPQAGA
201: GVAAPVCGGV AAALSSQQQA PPPAISLSRS RTASSTSPSS DVVISAVTWP GAAAMRRPNA AAFHRFEQQL PSPRTPPPDG RGGGGHNLEL QLMPPSSSCT
301: GGAAAPLGVA PSWYAAPQSP PAPISQGDNA AMQLQLSIGF CSGDNRGRTD VAGPSSGSAA RTMQEAREEL RQAMAEKAAA DEARAQAKRQ GELAEQELAS
401: AKRMRHQAQV ELSRAHALRE HAVRQVNATL LQITCFSCRQ KFRAVRPSAA MSSEVACSYV TEGGDVEVDN VDEPLILDGM RRRQQHATMD TV
001: MIDYERSNTT KNINTHHHNP PPSSSSSDLL PDGNGTAVTQ KRKRRPAGTP DPEAEVVSLS PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK
101: RETNEEVRKR VYVCPEPTCL HHNPCHALGD LVGIKKHFRR KHSNHKQWIC ERCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCTVRR
201: SQPSNHRLHE QQQHTTNATQ TASTAENNEN GDLSIGPILP GHPLQRRQSP PSEQQPSTLL YPFVTNGSIE LQLLPSRNCA DETSLSLSIG TMDQKTMSEV
301: EKKSYEKGET SLEREEARRE TKRQIEIAEL EFAEAKRIRQ HARAELHKAH LFREEASRRI SATMMQITCH NCKQHFQAPA ALVPPPPQTH CTDESTSLAV
401: SYMSSATTEG EKASDRASS
101: RETNEEVRKR VYVCPEPTCL HHNPCHALGD LVGIKKHFRR KHSNHKQWIC ERCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCTVRR
201: SQPSNHRLHE QQQHTTNATQ TASTAENNEN GDLSIGPILP GHPLQRRQSP PSEQQPSTLL YPFVTNGSIE LQLLPSRNCA DETSLSLSIG TMDQKTMSEV
301: EKKSYEKGET SLEREEARRE TKRQIEIAEL EFAEAKRIRQ HARAELHKAH LFREEASRRI SATMMQITCH NCKQHFQAPA ALVPPPPQTH CTDESTSLAV
401: SYMSSATTEG EKASDRASS
Arabidopsis Description
IDD14Protein indeterminate-domain 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.