Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005871_P002 | Maize | nucleus | 77.87 | 87.76 |
| EER96827 | Sorghum | nucleus | 83.7 | 83.37 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 70.02 | 70.88 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 69.82 | 70.67 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 69.22 | 69.92 |
| Zm00001d031759_P001 | Maize | nucleus | 68.01 | 65.25 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 48.89 | 64.29 |
| Os08t0467100-01 | Rice | nucleus | 68.41 | 63.79 |
| CDX96046 | Canola | nucleus | 29.58 | 63.09 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 47.28 | 61.84 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 45.27 | 60.81 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 50.3 | 58.96 |
| GSMUA_Achr10P... | Banana | nucleus | 45.27 | 58.75 |
| Solyc01g005060.2.1 | Tomato | nucleus | 39.64 | 58.11 |
| KRH60588 | Soybean | nucleus | 44.87 | 55.75 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 47.08 | 55.06 |
| KRH41885 | Soybean | nucleus | 41.65 | 54.47 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 47.69 | 54.23 |
| Solyc06g072360.2.1 | Tomato | nucleus | 42.45 | 53.83 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.05 | 53.26 |
| CDY04204 | Canola | nucleus | 38.23 | 52.92 |
| VIT_17s0000g01870.t01 | Wine grape | nucleus | 48.09 | 52.53 |
| PGSC0003DMT400069306 | Potato | nucleus | 43.26 | 52.31 |
| KRH38986 | Soybean | nucleus | 49.3 | 51.69 |
| Solyc03g098070.2.1 | Tomato | nucleus | 37.83 | 51.65 |
| CDY36123 | Canola | nucleus | 39.03 | 51.32 |
| Bra010981.1-P | Field mustard | nucleus | 39.03 | 51.32 |
| CDY60366 | Canola | nucleus | 39.44 | 51.17 |
| CDX84974 | Canola | nucleus | 39.44 | 51.17 |
| CDY51986 | Canola | nucleus | 38.83 | 51.06 |
| Bra024771.1-P | Field mustard | nucleus | 39.24 | 50.91 |
| KRH48724 | Soybean | nucleus | 49.3 | 50.72 |
| AT1G25250.3 | Thale cress | nucleus | 39.24 | 50.65 |
| KRH58582 | Soybean | nucleus | 44.47 | 50.23 |
| CDY04203 | Canola | plastid | 38.63 | 49.87 |
| AT1G68130.1 | Thale cress | nucleus | 41.65 | 49.4 |
| CDY07400 | Canola | nucleus | 40.85 | 49.15 |
| Bra004050.1-P | Field mustard | nucleus | 40.85 | 49.15 |
| KRH42485 | Soybean | nucleus | 44.47 | 48.89 |
| Bra004283.1-P | Field mustard | nucleus | 40.24 | 48.54 |
| GSMUA_Achr10P... | Banana | nucleus | 38.83 | 48.37 |
| Bra017432.1-P | Field mustard | nucleus | 42.25 | 47.73 |
| Bra026624.1-P | Field mustard | nucleus | 41.85 | 47.49 |
| AT2G01940.3 | Thale cress | nucleus | 42.45 | 47.31 |
| CDY17620 | Canola | nucleus | 42.25 | 47.3 |
| Bra024841.1-P | Field mustard | nucleus | 42.25 | 47.3 |
| CDY09400 | Canola | nucleus | 41.45 | 47.03 |
| CDY63960 | Canola | nucleus | 42.66 | 47.01 |
| CDY04102 | Canola | nucleus | 42.25 | 46.77 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 42.45 | 46.68 |
| CDY15800 | Canola | nucleus | 41.45 | 46.61 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 41.65 | 46.21 |
| CDY60095 | Canola | nucleus | 41.05 | 46.15 |
| Solyc05g054030.2.1 | Tomato | nucleus | 32.39 | 42.26 |
| Zm00001d039254_P001 | Maize | nucleus | 22.74 | 31.92 |
| Zm00001d009030_P002 | Maize | nucleus | 25.15 | 27.96 |
| Zm00001d008842_P001 | Maize | nucleus | 25.15 | 26.77 |
| Zm00001d011223_P002 | Maize | nucleus | 24.14 | 25.64 |
| Zm00001d032922_P001 | Maize | nucleus | 22.33 | 25.46 |
| Zm00001d044261_P001 | Maize | nucleus | 24.14 | 25.0 |
| Zm00001d039467_P001 | Maize | nucleus | 24.95 | 24.95 |
| Zm00001d042202_P001 | Maize | nucleus | 25.75 | 24.38 |
| Zm00001d028139_P001 | Maize | nucleus | 25.96 | 23.93 |
| Zm00001d021403_P001 | Maize | nucleus | 22.33 | 22.93 |
| Zm00001d016632_P001 | Maize | nucleus | 22.74 | 22.24 |
| Zm00001d006319_P001 | Maize | nucleus | 24.95 | 22.18 |
| Zm00001d017560_P001 | Maize | nucleus | 24.95 | 21.31 |
| Zm00001d026113_P006 | Maize | nucleus | 25.55 | 21.2 |
| Zm00001d031992_P001 | Maize | nucleus | 24.55 | 20.17 |
| Zm00001d002654_P003 | Maize | nucleus | 24.55 | 19.27 |
| Zm00001d006682_P001 | Maize | nucleus | 24.95 | 16.71 |
| Zm00001d021932_P001 | Maize | nucleus | 25.15 | 15.34 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | UniProt:A0A1D6I5M1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | ProteinID:ONM55390.1 | PFAM:PF00096 | ScanProsite:PS00028 | PFscan:PS50157 |
| PANTHER:PTHR10593 | PANTHER:PTHR10593:SF54 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0008449B77 | EnsemblPlantsGene:Zm00001d020683 |
| EnsemblPlants:Zm00001d020683_P001 | EnsemblPlants:Zm00001d020683_T001 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
Protein SHOOT GRAVITROPISM 5
Coordinates
chr7:+:128193411..128196443
Molecular Weight (calculated)
53200.1 Da
IEP (calculated)
8.777
GRAVY (calculated)
-0.486
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGFCAPAAG SPPDEAMPEP FCSLQIATTA AAAATTKKKR RPAGTPDPDA EVVSLSPRTL LESDRYVCEI CGQGFQRDQN LQMHRRRHKV PWKLLKREAG
101: EAARKRVFVC PEPSCLHHNP SHALGDLVGI KKHFRRKHSG QRQWACARCS KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD TCNAGRARAD
201: PSPACGAGST GVAAASAGSQ PQAPPPMSLS RTASSTSPSS DIVISPVAAW PGSSAPTIPS PATAAFHRFE QVPSPRTPPS DHHHRGGHNL ELQLMPPSGS
301: GVVGRGAPGV AEYGVAPRTP AAPPQSHPAT MQLQLSIGVC GGGGFGDEAM LAAAREKEEV EAREQLRQAV AEKAAANEAR AQARRHAELA EQELASAKRM
401: RRQAQVELSR AHALREHAVR QVNATLLQIT CLGCRHKFRA RPQLLDAALG APEVTCSYMS SVVTEGGDAE ADDEPPLDGR DGMLQRRRHA MAMDVIL
101: EAARKRVFVC PEPSCLHHNP SHALGDLVGI KKHFRRKHSG QRQWACARCS KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD TCNAGRARAD
201: PSPACGAGST GVAAASAGSQ PQAPPPMSLS RTASSTSPSS DIVISPVAAW PGSSAPTIPS PATAAFHRFE QVPSPRTPPS DHHHRGGHNL ELQLMPPSGS
301: GVVGRGAPGV AEYGVAPRTP AAPPQSHPAT MQLQLSIGVC GGGGFGDEAM LAAAREKEEV EAREQLRQAV AEKAAANEAR AQARRHAELA EQELASAKRM
401: RRQAQVELSR AHALREHAVR QVNATLLQIT CLGCRHKFRA RPQLLDAALG APEVTCSYMS SVVTEGGDAE ADDEPPLDGR DGMLQRRRHA MAMDVIL
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.