Factsheet for Zm00001d039254_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d006721_P001
Zm00001d007407_P006
Zm00001d011881_P001
Zm00001d021973_P001
Zm00001d023247_P001
Zm00001d023248_P001
Zm00001d029607_P001
Zm00001d031678_P003
Zm00001d037901_P001
Zm00001d042127_P001
Zm00001d052380_P001
Zm00001d052463_P001
Zm00001d052464_P001
Zm00001d052666_P014
Zm00001d052695_P016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	Zm00001d005029_P001	AT3G54220.1	17785527
AT1G03840.1	Zm00001d052380_P001	AT3G54220.1	17785527
AT1G03840.1	Zm00001d006721_P001	AT4G37650.1	17785527
AT1G03840.1	Zm00001d021973_P001	AT4G37650.1	17785527
AT1G03840.1	Zm00001d029607_P001	AT4G37650.1	17785527
AT5G44160.1	Zm00001d011881_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d023247_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d023248_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d037901_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d042127_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d052463_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d052464_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d007407_P006	AT3G12280.1	22921914
AT5G44160.1	Zm00001d031678_P003	AT3G12280.1	22921914
AT5G44160.1	Zm00001d052666_P014	AT3G12280.1	22921914
AT5G44160.1	Zm00001d052695_P016	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14910	Canola	nucleus	26.55	70.68
Bra036013.1-P	Field mustard	nucleus	29.1	65.19
CDY72283	Canola	nucleus	34.46	64.55
EES02157	Sorghum	nucleus	81.07	59.67
Os01t0242200-01	Rice	nucleus	68.08	58.07
TraesCS3B01G195900.1	Wheat	nucleus	73.16	52.75
TraesCS3D01G171300.1	Wheat	nucleus	72.88	52.55
TraesCS3A01G170700.1	Wheat	nucleus	72.32	52.35
Zm00001d009030_P002	Maize	nucleus	53.95	42.73
Bra015271.1-P	Field mustard	nucleus	57.91	42.53
CDX89862	Canola	nucleus	57.63	42.5
CDY18188	Canola	nucleus	57.34	42.38
VIT_12s0028g03030.t01	Wine grape	nucleus	50.85	42.15
AT5G44160.1	Thale cress	nucleus	55.37	42.06
CDY32514	Canola	nucleus	57.91	41.84
Bra032541.1-P	Field mustard	nucleus	57.91	41.84
CDX94759	Canola	nucleus	54.52	41.59
Bra033724.1-P	Field mustard	nucleus	54.52	41.59
CDY22307	Canola	nucleus	54.24	41.38
AT1G03840.1	Thale cress	nucleus	57.63	40.32
KRH49655	Soybean	nucleus	40.4	39.5
PGSC0003DMT400024272	Potato	nucleus	54.8	39.19
Solyc07g053570.2.1	Tomato	nucleus	55.08	38.84
KRH22332	Soybean	nucleus	49.44	36.92
KRH55868	Soybean	nucleus	49.44	36.92
KRH25657	Soybean	nucleus	48.87	36.73
Zm00001d008842_P001	Maize	nucleus	48.02	36.4
KRH26995	Soybean	nucleus	49.15	36.25
Zm00001d011223_P002	Maize	nucleus	47.46	35.9
Zm00001d044261_P001	Maize	nucleus	48.59	35.83
Zm00001d039467_P001	Maize	nucleus	49.44	35.21
Zm00001d021403_P001	Maize	nucleus	46.61	34.09
Zm00001d032922_P001	Maize	nucleus	41.53	33.72
Zm00001d028139_P001	Maize	nucleus	50.56	33.21
Zm00001d016632_P001	Maize	nucleus	44.35	30.91
Zm00001d042202_P001	Maize	nucleus	45.76	30.86
Zm00001d017560_P001	Maize	nucleus	48.59	29.55
Zm00001d026113_P006	Maize	nucleus	48.59	28.71
Zm00001d031992_P001	Maize	nucleus	47.74	27.93
Zm00001d002654_P003	Maize	nucleus	48.87	27.33
Zm00001d006319_P001	Maize	nucleus	40.68	25.76
Zm00001d005871_P002	Maize	nucleus	31.92	25.62
Zm00001d028361_P001	Maize	nucleus, plastid	31.07	24.34
Zm00001d047976_P001	Maize	nucleus, plastid	30.79	24.33
Zm00001d020683_P001	Maize	nucleus	31.92	22.74
Zm00001d006682_P001	Maize	nucleus	45.76	21.83
Zm00001d031759_P001	Maize	nucleus	31.36	21.43
Zm00001d021932_P001	Maize	nucleus	46.05	20.0

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A0A1D6MER1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	ProteinID:ONM28125.1	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002208209	EnsemblPlantsGene:Zm00001d039254	EnsemblPlants:Zm00001d039254_P001	EnsemblPlants:Zm00001d039254_T001
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

Zinc finger protein MAGPIE

Coordinates

chr3:-:591687..592751

Molecular Weight (calculated)

37985.3 Da

IEP (calculated)

8.993

GRAVY (calculated)

-0.390

Length

354 amino acids

Sequence
(BLAST)

001: MHACNTDPAA EVIALSPRTL LATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRSAG KEPRKRVYVC PEKTCVHHNP SRALGDLTGI KKHFCRKHGE
101: KKWKCDKCNK RYAVQSDWKA HAKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEETAY APLGPHVGDL SLPSMVGHIG ANGSIMLPGA PPQLYADLFA
201: PAPPQLGWLC GNNGKLASSN ASELTSAAAS GKQETDSVLS MFSRQQHANP AVAGAGDMMS ATALLQKAAQ MGADSGRQQS SDDGAGGLLS SASSLRGPGP
301: GTNTLMSLPY DVLSAVRHAG LVKNAAVDVG REETRDFLGV GMQALCSSSL NGWI

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.