Factsheet for Bra032541.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005741.1-P
Bra007056.1-P
Bra009549.1-P
Bra010606.1-P
Bra011777.1-P
Bra017842.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	Bra007056.1-P	AT3G54220.1	17785527
AT1G03840.1	Bra010606.1-P	AT4G37650.1	17785527
AT1G03840.1	Bra011777.1-P	AT4G37650.1	17785527
AT1G03840.1	Bra017842.1-P	AT4G37650.1	17785527
AT1G03840.1	Bra005741.1-P	AT5G03150.1	17785527
AT1G03840.1	Bra009549.1-P	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32514	Canola	nucleus	100.0	100.0
CDY72283	Canola	nucleus	37.35	96.83
Bra015271.1-P	Field mustard	nucleus	83.67	85.06
AT1G03840.1	Thale cress	nucleus	84.29	81.62
Bra036013.1-P	Field mustard	nucleus	24.69	76.58
Bra033724.1-P	Field mustard	nucleus	61.84	65.3
Zm00001d039254_P001	Maize	nucleus	41.84	57.91
Os01t0242200-01	Rice	nucleus	48.98	57.83
GSMUA_Achr7P14780_001	Banana	nucleus	41.43	56.86
PGSC0003DMT400024272	Potato	nucleus	51.63	51.11
Solyc07g053570.2.1	Tomato	nucleus	51.63	50.4
GSMUA_Achr9P06650_001	Banana	nucleus	37.35	49.86
TraesCS3B01G195900.1	Wheat	nucleus	49.59	49.49
TraesCS3A01G170700.1	Wheat	nucleus	49.18	49.28
TraesCS3D01G171300.1	Wheat	nucleus	48.98	48.88
GSMUA_Achr10P...	Banana	nucleus	37.55	48.81
EES02157	Sorghum	nucleus	47.76	48.65
VIT_12s0028g03030.t01	Wine grape	nucleus	41.43	47.54
GSMUA_Achr6P27030_001	Banana	nucleus	33.67	46.61
Zm00001d009030_P002	Maize	nucleus	39.8	43.62
Bra036098.1-P	Field mustard	nucleus, plastid	38.37	43.12
KRH22332	Soybean	nucleus	41.63	43.04
Bra030886.1-P	Field mustard	nucleus	37.76	42.33
KRH26995	Soybean	nucleus	41.22	42.08
Bra018535.1-P	Field mustard	plastid	34.29	41.58
Bra033840.1-P	Field mustard	nucleus	36.53	39.51
Bra024834.1-P	Field mustard	nucleus, plastid	43.88	38.95
Bra027394.1-P	Field mustard	nucleus	39.59	38.42
Bra037151.1-P	Field mustard	nucleus	38.37	38.21
Bra021510.1-P	Field mustard	nucleus	39.59	38.04
Bra005741.1-P	Field mustard	nucleus	38.98	37.9
Bra026819.1-P	Field mustard	nucleus	35.71	37.47
Bra001523.1-P	Field mustard	nucleus	38.57	36.91
Bra026616.1-P	Field mustard	nucleus	38.37	36.79
Bra024833.1-P	Field mustard	plastid	38.37	36.65
Bra009549.1-P	Field mustard	nucleus	38.57	36.63
Bra026617.1-P	Field mustard	nucleus	43.47	36.1
Bra040974.1-P	Field mustard	nucleus, plastid	43.06	36.07
Bra026204.1-P	Field mustard	nucleus, plastid	30.61	33.33
Bra026203.1-P	Field mustard	nucleus, plastid	30.41	32.11
Bra024771.1-P	Field mustard	nucleus	23.47	30.03
Bra010981.1-P	Field mustard	nucleus	22.65	29.37
Bra023223.1-P	Field mustard	plastid	27.55	28.12
Bra004283.1-P	Field mustard	nucleus	23.47	27.91
Bra004050.1-P	Field mustard	nucleus	23.27	27.6
Bra026624.1-P	Field mustard	nucleus	23.27	26.03
Os07t0581366-00	Rice	cytosol, nucleus	33.67	26.03
Bra017432.1-P	Field mustard	nucleus	23.27	25.91
Bra024841.1-P	Field mustard	nucleus	23.47	25.9
Zm00001d006682_P001	Maize	nucleus	35.1	23.18
EER97442	Sorghum	nucleus	35.51	22.19
Zm00001d021932_P001	Maize	nucleus	35.92	21.6
TraesCS2B01G218900.1	Wheat	nucleus	35.31	21.57
TraesCS2A01G188400.2	Wheat	nucleus	35.31	20.84
TraesCS2D01G199300.3	Wheat	nucleus	35.1	20.36
Bra038293.1-P	Field mustard	nucleus	36.33	20.09
HORVU2Hr1G036710.3	Barley	nucleus	29.8	16.82

Protein Annotations

EnsemblPlants:Bra032541.1	EnsemblPlants:Bra032541.1-P	EnsemblPlantsGene:Bra032541	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26
PFAM:PF00096	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI000254368E
UniProt:M4EUQ9	MapMan:15.5.15	:	:	:	:

Description

AT1G03840 (E=1e-207) MGP | MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding

Coordinates

chrA09:+:36533172..36535310

Molecular Weight (calculated)

54287.6 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.695

Length

490 amino acids

Sequence
(BLAST)

001: MTAEEHTISS SGGYVQNLSA TDHVDHRHEH EPFNPPLAKK KRNLPGNPDP EAEVIALSPK TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT
101: SKEVRKRVYV CPEKSCVHHN PTRALGDLTG IKKHFCRKHG EKKWKCGKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS RRDSFITHRA FCDALAEETA
201: RLNAASHLKS PTGNNLNYHY LMGTLIPSPQ PPPSFPFGAP QPQHHHHPFP ITTTTFDQHH HQDSMQPASS LSLWMGGNVN HHQVTNEDCT QPQSPQEDYN
301: WVFGNANNSG ELSDSLITRE NINMAAHNEN ANAVTSLSVP SLFSNVDQMR QDANVAVANM SATALLQKAA QMGVTSSTPT TTSDQSAFLQ SFKSKISDQS
401: PNVEDGGSDK FFALFGSNSV GLMSNNGLGH EIVNPRNGVT VVTGIDELQN YPLKRRRVEN GDALGGGQTR DFLGVGVQTM CRSSSINGWI

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.