Factsheet for Bra033840.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G45260.1	Thale cress	nucleus	80.13	81.39
Bra036013.1-P	Field mustard	nucleus	23.84	68.35
Bra036098.1-P	Field mustard	nucleus, plastid	39.07	40.6
Bra018535.1-P	Field mustard	plastid	35.76	40.1
Bra038293.1-P	Field mustard	nucleus	77.04	39.39
Bra030886.1-P	Field mustard	nucleus	37.75	39.13
Bra033724.1-P	Field mustard	nucleus	39.74	38.79
Bra015271.1-P	Field mustard	nucleus	39.96	37.55
Bra032541.1-P	Field mustard	nucleus	39.51	36.53
Bra037151.1-P	Field mustard	nucleus	38.63	35.57
Bra026204.1-P	Field mustard	nucleus, plastid	34.66	34.89
Bra005741.1-P	Field mustard	nucleus	38.41	34.52
Bra026819.1-P	Field mustard	nucleus	35.32	34.26
Bra027394.1-P	Field mustard	nucleus	37.97	34.06
Bra024833.1-P	Field mustard	plastid	38.41	33.92
Bra009549.1-P	Field mustard	nucleus	38.63	33.91
Bra021510.1-P	Field mustard	nucleus	37.75	33.53
Bra026616.1-P	Field mustard	nucleus	37.53	33.27
Bra026203.1-P	Field mustard	nucleus, plastid	33.55	32.76
Bra001523.1-P	Field mustard	nucleus	36.87	32.62
Bra024834.1-P	Field mustard	nucleus, plastid	39.51	32.43
Bra023223.1-P	Field mustard	plastid	33.33	31.46
Bra040974.1-P	Field mustard	nucleus, plastid	40.4	31.28
Bra026617.1-P	Field mustard	nucleus	40.62	31.19
Bra010981.1-P	Field mustard	nucleus	24.94	29.89
Bra024771.1-P	Field mustard	nucleus	25.17	29.77
Bra026624.1-P	Field mustard	nucleus	27.59	28.54
Bra024841.1-P	Field mustard	nucleus	27.81	28.38
Bra017432.1-P	Field mustard	nucleus	26.71	27.5
Bra004283.1-P	Field mustard	nucleus	24.72	27.18
Bra004050.1-P	Field mustard	nucleus	24.28	26.63

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra033840	EnsemblPlants:Bra033840.1	EnsemblPlants:Bra033840.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:JKD-like	UniProt:M4EYE8
PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF42	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI00025439A5	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

AT3G45260 (E=1e-163) | zinc finger (C2H2 type) family protein

Coordinates

chrA01:-:13604780..13606454

Molecular Weight (calculated)

50326.0 Da

IEP (calculated)

9.701

GRAVY (calculated)

-0.774

Length

453 amino acids

Sequence
(BLAST)

001: MMIPDDHHHL SFPSYFLHQE QITPNLNPNP NPTSSNSNKR KRNLPGNPGM YNPDAEVIAL SPNSLMATNR FICEVCNKGF KRDQNLQLHR RGHNLPWKLK
101: QRTNKEQVKK KVYICPEKAC VHHDPARALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVM SDWKAHSKIC GTREYRCDCG TLFSRKDSFI THRAFCDALA
201: EESSRFASVP PAATAAPYLN NAPDAEVNLG NVKLNHQQPG ININRHNTNG FMGQAFANQV SLPANVFASS SLPSPHSASD SLQNLWHLQG QSSHQWLLNE
301: NNNRNILQRG ISNNQEDQDT KKGIISSGYL FSSDSSTNYD QSGGQVIPSM SATALLQKAA QMGSKRSESS SNNSTAFGLM TSSIFNNKHT ENDIKTKEVD
401: ERGFTRDFLG VGSQNRPWPL LMVNHNLPNM TQPATTDVKP TAGTATAGTP TAE

Best Arabidopsis Sequence Match ( AT3G45260.2 )
(BLAST)

001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ

Arabidopsis Description

IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.