Factsheet for Bra024833.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17614	Canola	nucleus, plastid	99.22	99.22
CDY03080	Canola	nucleus, plastid	97.47	96.9
AT2G02080.3	Thale cress	nucleus, plastid	85.19	84.69
Bra026616.1-P	Field mustard	nucleus	80.9	81.21
Bra036013.1-P	Field mustard	nucleus	20.08	65.19
Bra026819.1-P	Field mustard	nucleus	59.26	65.1
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	33.92	47.8
KRG89168	Soybean	nucleus, plastid	31.38	46.26
Bra024834.1-P	Field mustard	nucleus, plastid	47.37	44.02
Bra026617.1-P	Field mustard	nucleus	48.93	42.54
GSMUA_Achr3P13990_001	Banana	nucleus	35.28	42.49
Bra040974.1-P	Field mustard	nucleus, plastid	48.34	42.39
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	31.77	40.95
Bra033724.1-P	Field mustard	nucleus	36.65	40.52
Bra018535.1-P	Field mustard	plastid	31.77	40.35
GSMUA_Achr1P17940_001	Banana	nucleus	36.26	39.83
GSMUA_Achr1P07110_001	Banana	nucleus	37.43	39.51
Bra015271.1-P	Field mustard	nucleus	37.04	39.42
Bra036098.1-P	Field mustard	nucleus, plastid	33.33	39.22
GSMUA_Achr10P...	Banana	nucleus	36.45	39.04
Bra030886.1-P	Field mustard	nucleus	33.14	38.9
Bra033840.1-P	Field mustard	nucleus	33.92	38.41
Bra032541.1-P	Field mustard	nucleus	36.65	38.37
Bra026204.1-P	Field mustard	nucleus, plastid	33.33	38.0
Bra005741.1-P	Field mustard	nucleus	37.04	37.7
GSMUA_Achr4P04310_001	Banana	nucleus	34.5	37.42
GSMUA_Achr9P23870_001	Banana	nucleus	31.38	37.1
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	35.09	36.73
Os09t0555700-02	Rice	nucleus	38.01	36.45
PGSC0003DMT400075837	Potato	nucleus	36.65	36.29
KRH49489	Soybean	nucleus, plastid	37.43	36.02
KRH49485	Soybean	nucleus	38.01	35.91
Bra009549.1-P	Field mustard	nucleus	35.87	35.66
Bra027394.1-P	Field mustard	nucleus	35.09	35.64
GSMUA_Achr4P05240_001	Banana	nucleus	34.7	35.6
Solyc04g008500.2.1	Tomato	nucleus	35.87	35.59
Bra026203.1-P	Field mustard	nucleus, plastid	32.16	35.56
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	33.72	35.38
TraesCS5B01G358600.1	Wheat	nucleus, plastid	37.62	35.35
VIT_01s0010g02100.t01	Wine grape	nucleus	39.38	35.31
GSMUA_Achr1P02080_001	Banana	nucleus	37.62	35.28
TraesCS5D01G364900.1	Wheat	nucleus, plastid	37.43	35.1
TraesCS5A01G356100.1	Wheat	nucleus, plastid	37.23	35.05
Bra037151.1-P	Field mustard	nucleus	33.53	34.96
Bra021510.1-P	Field mustard	nucleus	34.7	34.9
GSMUA_Achr11P...	Banana	nucleus	36.26	34.9
Os08t0554400-02	Rice	nucleus	37.23	34.85
KRG89167	Soybean	nucleus, plastid	37.23	34.79
GSMUA_Achr11P...	Banana	nucleus	34.5	34.64
KRH34792	Soybean	nucleus	37.43	34.59
KRG90705	Soybean	nucleus	38.21	34.57
Zm00001d021403_P001	Maize	nucleus	32.55	34.5
KRG91985	Soybean	nucleus	37.62	34.46
KRH36039	Soybean	nucleus	38.21	34.33
KXG25416	Sorghum	nucleus	36.84	34.18
OQU89911	Sorghum	nucleus, plastid	35.48	34.15
Bra001523.1-P	Field mustard	nucleus	33.53	33.59
EES11271	Sorghum	nucleus	38.21	32.72
Bra023223.1-P	Field mustard	plastid	30.6	32.71
Zm00001d026113_P006	Maize	nucleus	38.01	32.55
Zm00001d017560_P001	Maize	nucleus	36.65	32.3
TraesCS6B01G271000.1	Wheat	nucleus	36.26	32.29
KXG31026	Sorghum	nucleus	37.43	32.27
TraesCS6D01G235800.1	Wheat	nucleus	36.26	32.18
TraesCS6A01G254500.1	Wheat	nucleus	36.26	32.18
TraesCS2B01G421100.1	Wheat	nucleus	38.21	32.03
Os04t0566400-02	Rice	nucleus	38.01	31.81
Zm00001d031992_P001	Maize	nucleus	37.04	31.41
Os02t0672100-01	Rice	nucleus	37.62	31.38
Zm00001d002654_P003	Maize	nucleus	38.01	30.81
GSMUA_Achr11P...	Banana	nucleus	33.53	30.39
TraesCS2A01G403200.2	Wheat	nucleus	38.4	29.71
TraesCS2D01G400300.2	Wheat	nucleus	38.21	29.61
KXG36163	Sorghum	nucleus	32.94	29.04
Bra010981.1-P	Field mustard	nucleus	20.86	28.31
Zm00001d006319_P001	Maize	nucleus	30.6	28.09
Bra024771.1-P	Field mustard	nucleus	20.47	27.42
Bra004283.1-P	Field mustard	nucleus	20.86	25.97
Bra024841.1-P	Field mustard	nucleus	22.03	25.45
Bra004050.1-P	Field mustard	nucleus	20.47	25.42
Bra026624.1-P	Field mustard	nucleus	21.64	25.34
Bra017432.1-P	Field mustard	nucleus	21.64	25.23
Bra038293.1-P	Field mustard	nucleus	31.97	18.51

Protein Annotations

EnsemblPlants:Bra024833.1	EnsemblPlants:Bra024833.1-P	EnsemblPlantsGene:Bra024833	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000253F8DB	UniProt:M4E7S7	MapMan:15.5.15	:	:	:

Description

AT2G02080 (E=4e-217) AtIDD4 | AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor

Coordinates

chrA06:+:23689190..23692043

Molecular Weight (calculated)

55658.6 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.664

Length

513 amino acids

Sequence
(BLAST)

001: MSSSSYNTSV VPSSSSTQPF FITGSSAGDN AFDRKDTFMS MVQQPNSSAP QPKKRRNQPG NPSNLIDQTD PDAEVAALSP TTQMATNRFI CDVCKKGFQR
101: EQNLQLHRRG HNLPWKLKQK STKEVKRKVY ICPEPTCVHH DPARALGDLT GVKKHYYRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTK EYRCDCGTIF
201: SRRDSYITHR AFCDALIQET ARNPTVSFTS MTAASSGAGF RGFHGRLEGG NALSHHHLSD HPNSGFSSFG GYNLNIASSE NSRDFAPQTS NPNFLVQSQG
301: MLTQPNNNNN DQSFMNQQGL IQFDPVNNIN LKSSTTNNSF FNLGFFQENT KNSETAIPSL YSTDSLVHHR EESLNAGSNV SATALLQKAT QLGSITSNDP
401: SALFRGLASS SNSSSVVVND FGGGQIMGND NNGNLQGLMN SLVAVNGGGA GGSGGNIFNV DFGNNNVNMS GSDNLTLDFL GVGGMVRNVN RGGAGRGRVR
501: GDVSLNGELK FPE

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.