Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g008500.2.1 | Tomato | nucleus | 92.47 | 92.65 |
| CDY04118 | Canola | nucleus | 20.66 | 89.92 |
| CDY09390 | Canola | nucleus | 20.66 | 89.92 |
| CDY53540 | Canola | nucleus | 26.25 | 70.1 |
| CDY04117 | Canola | nucleus | 27.41 | 66.36 |
| KRG89168 | Soybean | nucleus, plastid | 37.64 | 56.03 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 36.87 | 52.47 |
| GSMUA_Achr5P11770_001 | Banana | nucleus, plastid | 35.33 | 45.98 |
| GSMUA_Achr4P11810_001 | Banana | mitochondrion, nucleus | 42.08 | 44.49 |
| GSMUA_Achr3P13990_001 | Banana | nucleus | 36.29 | 44.13 |
| GSMUA_Achr9P23870_001 | Banana | nucleus | 36.87 | 44.01 |
| KRH49489 | Soybean | nucleus, plastid | 45.17 | 43.9 |
| KRH36039 | Soybean | nucleus | 48.07 | 43.61 |
| KRG90705 | Soybean | nucleus | 47.49 | 43.39 |
| KRH49485 | Soybean | nucleus | 45.37 | 43.28 |
| GSMUA_Achr4P04310_001 | Banana | nucleus | 39.0 | 42.71 |
| CDY45271 | Canola | nucleus | 34.17 | 42.55 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 40.15 | 42.54 |
| GSMUA_Achr1P17940_001 | Banana | nucleus | 38.03 | 42.18 |
| KRG91985 | Soybean | nucleus | 45.56 | 42.14 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 46.53 | 42.13 |
| KRG89167 | Soybean | nucleus, plastid | 44.59 | 42.08 |
| GSMUA_Achr1P07110_001 | Banana | nucleus | 39.38 | 41.98 |
| PGSC0003DMT400063501 | Potato | nucleus | 29.15 | 41.94 |
| KRH34792 | Soybean | nucleus | 44.59 | 41.62 |
| GSMUA_Achr10P... | Banana | nucleus | 38.22 | 41.34 |
| CDY45270 | Canola | nucleus | 35.14 | 40.44 |
| Zm00001d021403_P001 | Maize | nucleus | 37.64 | 40.29 |
| Bra026204.1-P | Field mustard | nucleus, plastid | 34.94 | 40.22 |
| CDY03081 | Canola | nucleus | 39.96 | 39.5 |
| CDY17615 | Canola | nucleus | 39.96 | 39.28 |
| PGSC0003DMT400004390 | Potato | nucleus | 34.56 | 39.25 |
| Os09t0555700-02 | Rice | nucleus | 40.54 | 39.25 |
| CDY59418 | Canola | nucleus | 31.27 | 39.23 |
| GSMUA_Achr1P02080_001 | Banana | nucleus | 41.12 | 38.94 |
| KXG25416 | Sorghum | nucleus | 41.51 | 38.88 |
| OQU89911 | Sorghum | nucleus, plastid | 39.96 | 38.84 |
| Os08t0554400-02 | Rice | nucleus | 40.93 | 38.69 |
| PGSC0003DMT400021189 | Potato | nucleus | 34.94 | 38.68 |
| PGSC0003DMT400027159 | Potato | nucleus | 36.68 | 38.62 |
| Bra026203.1-P | Field mustard | nucleus, plastid | 34.56 | 38.58 |
| GSMUA_Achr11P... | Banana | nucleus | 39.19 | 38.09 |
| CDY17440 | Canola | nucleus | 35.14 | 38.08 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 37.84 | 37.98 |
| PGSC0003DMT400020945 | Potato | nucleus | 36.68 | 37.92 |
| CDY15814 | Canola | nucleus | 34.56 | 37.84 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 39.77 | 37.66 |
| Bra024834.1-P | Field mustard | nucleus, plastid | 39.96 | 37.5 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 39.38 | 37.43 |
| GSMUA_Achr4P05240_001 | Banana | nucleus | 36.1 | 37.4 |
| PGSC0003DMT400049788 | Potato | nucleus | 34.36 | 37.32 |
| Bra026819.1-P | Field mustard | nucleus | 33.59 | 37.26 |
| CDX81653 | Canola | nucleus | 33.59 | 37.26 |
| Bra026616.1-P | Field mustard | nucleus | 36.68 | 37.18 |
| GSMUA_Achr11P... | Banana | nucleus | 36.68 | 37.18 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 39.19 | 37.18 |
| CDY09391 | Canola | nucleus | 40.54 | 37.04 |
| AT1G14580.3 | Thale cress | nucleus | 34.36 | 37.01 |
| CDY15811 | Canola | nucleus | 40.54 | 36.97 |
| CDY17614 | Canola | nucleus, plastid | 36.49 | 36.84 |
| Bra024833.1-P | Field mustard | plastid | 36.29 | 36.65 |
| CDY03080 | Canola | nucleus, plastid | 36.29 | 36.43 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 36.87 | 36.17 |
| PGSC0003DMT400024272 | Potato | nucleus | 34.56 | 36.16 |
| GSMUA_Achr11P... | Banana | nucleus | 39.19 | 35.87 |
| PGSC0003DMT400012504 | Potato | nucleus | 34.75 | 35.86 |
| Bra026617.1-P | Field mustard | nucleus | 40.73 | 35.76 |
| TraesCS6A01G254500.1 | Wheat | nucleus | 39.58 | 35.47 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 39.38 | 35.42 |
| PGSC0003DMT400013174 | Potato | nucleus | 34.56 | 35.38 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 39.38 | 35.29 |
| Bra040974.1-P | Field mustard | nucleus, plastid | 39.77 | 35.21 |
| Zm00001d031992_P001 | Maize | nucleus | 41.12 | 35.21 |
| PGSC0003DMT400029550 | Potato | nucleus | 30.7 | 35.1 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 41.31 | 34.97 |
| EES11271 | Sorghum | nucleus | 40.35 | 34.89 |
| PGSC0003DMT400006385 | Potato | nucleus | 36.1 | 34.57 |
| AT2G02070.2 | Thale cress | nucleus | 39.96 | 34.39 |
| Zm00001d017560_P001 | Maize | nucleus | 38.42 | 34.19 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 43.63 | 34.19 |
| Zm00001d026113_P006 | Maize | nucleus | 39.38 | 34.06 |
| Os04t0566400-02 | Rice | nucleus | 40.15 | 33.93 |
| KXG31026 | Sorghum | nucleus | 38.8 | 33.78 |
| Bra023223.1-P | Field mustard | plastid | 31.08 | 33.54 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 33.98 | 33.52 |
| KXG36163 | Sorghum | nucleus | 37.45 | 33.33 |
| Os02t0672100-01 | Rice | nucleus | 39.58 | 33.33 |
| Zm00001d002654_P003 | Maize | nucleus | 40.54 | 33.18 |
| Zm00001d006319_P001 | Maize | nucleus | 35.33 | 32.74 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 41.31 | 32.33 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 41.31 | 32.28 |
| CDY12268 | Canola | nucleus | 27.41 | 31.84 |
| CDY68983 | Canola | nucleus | 22.78 | 30.18 |
| PGSC0003DMT400069306 | Potato | nucleus | 22.59 | 28.47 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 22.97 | 27.23 |
| PGSC0003DMT400040064 | Potato | nucleus | 33.01 | 23.23 |
Protein Annotations
| EntrezGene:102591583 | MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | UniProt:M1CVT2 | PFAM:PF00096 | EnsemblPlantsGene:PGSC0003DMG400029483 | PGSC:PGSC0003DMG400029483 | EnsemblPlants:PGSC0003DMT400075837 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF66 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI000295D39A | RefSeq:XP_006355017.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400029483]
Coordinates
chr4:+:3476277..3484104
Molecular Weight (calculated)
57345.9 Da
IEP (calculated)
9.241
GRAVY (calculated)
-0.779
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGSSTSSM FFGMRDEELS QNQQENLLQA QAPSKKRRNQ PGTPSPDAEV IALSPKTLMA TNRFLCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKNTKEV
101: AKRKVYLCPE PTCVHHEPSR ALGDLTGIKK HYFRKHGEKK FKCEKCSKKY AVKSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALVQENARNI
201: LSPNSLMNTL GMNNNQYLYG SSSNINLGTF SKLGNNNNNI TKTTTSGVQF DHHHDNNLIG SSTTTTTTNN PFFLQETNQD YNPNNNIKPL MVHGLMQLPN
301: LDQNNDNNNS SSTMFNLNFF QNNLSTNSGI LGDHHHDNNN ISCSIPSLYG VQVLESSNTT CSSGPIMSAT ALLQKAAQMG SSSTSNISAT ASLFKAFGST
401: SGSSSSGTKS DHPAFNFGSD ITVDGGIINA YGGGSHEGLY NTSTKLNFEQ HQGPPQKKQL TRDFLGVGEI VRSMNGRFST QREQQQQQNN GLNNMMSSLL
501: DPERNQIQQS FGSATNFQ
101: AKRKVYLCPE PTCVHHEPSR ALGDLTGIKK HYFRKHGEKK FKCEKCSKKY AVKSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALVQENARNI
201: LSPNSLMNTL GMNNNQYLYG SSSNINLGTF SKLGNNNNNI TKTTTSGVQF DHHHDNNLIG SSTTTTTTNN PFFLQETNQD YNPNNNIKPL MVHGLMQLPN
301: LDQNNDNNNS SSTMFNLNFF QNNLSTNSGI LGDHHHDNNN ISCSIPSLYG VQVLESSNTT CSSGPIMSAT ALLQKAAQMG SSSTSNISAT ASLFKAFGST
401: SGSSSSGTKS DHPAFNFGSD ITVDGGIINA YGGGSHEGLY NTSTKLNFEQ HQGPPQKKQL TRDFLGVGEI VRSMNGRFST QREQQQQQNN GLNNMMSSLL
501: DPERNQIQQS FGSATNFQ
001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
Arabidopsis Description
IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.