Factsheet for PGSC0003DMT400004390

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004390
PGSC0003DMT400008694
PGSC0003DMT400024272
PGSC0003DMT400027159
PGSC0003DMT400043358
PGSC0003DMT400055239

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	PGSC0003DMT400024272	AT1G03840.1	17785527
AT5G03150.1	PGSC0003DMT400043358	AT3G54220.1	17785527
AT5G03150.1	PGSC0003DMT400055239	AT4G37650.1	17785527
AT5G03150.1	PGSC0003DMT400004390	AT5G03150.1	17785527
AT5G03150.1	PGSC0003DMT400008694	AT5G03150.1	17785527
AT5G03150.1	PGSC0003DMT400027159	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007550.2.1	Tomato	nucleus, plastid	95.18	94.55
VIT_08s0040g02100.t01	Wine grape	nucleus	56.58	52.44
KRH67672	Soybean	nucleus	55.48	49.22
KRH19850	Soybean	nucleus	56.36	48.95
KRG95964	Soybean	nucleus	54.61	48.82
KRH32442	Soybean	nucleus	55.04	47.18
AT5G03150.1	Thale cress	nucleus	48.46	43.94
CDY10404	Canola	nucleus	48.25	43.39
CDY11241	Canola	nucleus	47.37	42.94
Bra005741.1-P	Field mustard	nucleus	47.37	42.86
CDX70328	Canola	nucleus	48.25	42.8
CDX80854	Canola	nucleus	47.37	42.77
Bra009549.1-P	Field mustard	nucleus	48.25	42.64
CDY44344	Canola	nucleus	46.27	42.2
PGSC0003DMT400063501	Potato	nucleus	32.46	41.11
PGSC0003DMT400027159	Potato	nucleus	44.3	41.06
GSMUA_Achr7P22720_001	Banana	mitochondrion	24.34	39.5
PGSC0003DMT400021189	Potato	nucleus	39.91	38.89
PGSC0003DMT400020945	Potato	nucleus	42.11	38.32
PGSC0003DMT400008694	Potato	nucleus, plastid	43.86	37.88
PGSC0003DMT400049788	Potato	nucleus	39.47	37.74
PGSC0003DMT400024272	Potato	nucleus	40.57	37.37
PGSC0003DMT400029550	Potato	nucleus	36.62	36.87
PGSC0003DMT400012504	Potato	nucleus	38.82	35.26
PGSC0003DMT400013174	Potato	nucleus	39.04	35.18
PGSC0003DMT400033039	Potato	nucleus, plastid	40.35	35.05
PGSC0003DMT400075837	Potato	nucleus	39.25	34.56
PGSC0003DMT400006385	Potato	nucleus	40.57	34.2
PGSC0003DMT400069306	Potato	nucleus	26.97	29.93
PGSC0003DMT400079735	Potato	nucleus, plastid	26.75	27.92
PGSC0003DMT400040064	Potato	nucleus	38.16	23.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400004390	EnsemblPlantsGene:PGSC0003DMG400001747	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF99	PFAM:PF12171	PFscan:PS50157	PGSC:PGSC0003DMG400001747	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029551E2	UniProt:M0ZNC9	MapMan:15.5.15	:

Description

C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400001747]

Coordinates

chr9:-:6222771..6225210

Molecular Weight (calculated)

50763.1 Da

IEP (calculated)

9.775

GRAVY (calculated)

-0.693

Length

456 amino acids

Sequence
(BLAST)

001: MSGDLFSIHQ QQQQLLVEQN PNPKANSSSK KRRNLPGTPD PDAEVIAISP KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKQEIVKKKV
101: YICPEKTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHTKTCGT REYKCDCGTL FSRKDSFITH RAFCDALAEE SARITSVGTT
201: PNNLNFNQQQ QQPVGISQIG TSFVQDFTSM TTVNPLHQHQ QKPRLSLWLN QPNNMSSPSS NLFGLPDHHM VQIPSPNMFG TASSIGNQIL TPTTTTTNTP
301: ATSNPPIPMS ATALLQKAAQ MGSTKSTPNY FSNTFGVMHS SSSPSSNNTT QIFNNNEIHQ AFAKQTEDYN QTENILINGC PNMNLSVNSK AINLDQALLQ
401: TGGMHNQTVH FNLHNSLTRD FLGMGNEGGQ PFLPQELAKF ASMNAAMGLS HYSTGH

Best Arabidopsis Sequence Match ( AT5G03150.1 )
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG

Arabidopsis Description

JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.